reduce number of simultaneously running compile_model to avoid mem issues

13473cca · Carlos de Lannoy · 0e9b2cc7 · 13473cca
Commit 13473cca authored 3 years ago by Carlos de Lannoy
--- a/threshold_search/optimize_thresholds.sf
+++ b/threshold_search/optimize_thresholds.sf
@@ -48,7 +48,8 @@ rule compile_model:
        species_seq_fasta='{{target_fastas_dir}}{species}.fasta'
    output:
        model='{{model_dir}}{species}/compiled.mod'
-    threads: max(workflow.cores // len(species_list), 4)
+    # threads: max(workflow.cores // len(species_list), 4)
+    threads: workflow.cores // 4
    shell:
        """
        python {__baseless__} compile_model \