Update README.md

README.md

@@ -90,16 +90,14 @@ Example: if ```path1: /lustre/nobackup/WUR/ABGC/shared/Chicken/Africa/X201SC2003
 - **mapping_stats** directory containing the qualimap results and a summary of the qualimap results for all samples in ```sample_quality_summary.tsv```
   - **qualimap** contains qualimap results per sample
 
-### Install conda if it is not yet installed
-Install miniconda on linux
-
-[Download installer](https://docs.conda.io/en/latest/miniconda.html)
-
-[Installation instructions](https://conda.io/projects/conda/en/latest/user-guide/install/index.html)
+## Install conda if it is not yet installed
+Install miniconda on linux. 
+[Download installer.](https://docs.conda.io/en/latest/miniconda.html)
+[Installation instructions.](https://conda.io/projects/conda/en/latest/user-guide/install/index.html)
 
 
-Download the installer to your home directory. 
 
+1. Download the installer to your home directory. 
 Choose the version according to your operating system. You can right click the link, copy and download with:
 `wget <link>`
 
@@ -107,21 +105,24 @@ For example:
 `wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh`
 
 
-To install miniconda, run:
+
+2. To install miniconda, run:
 `bash <installer name>`
 
 For example:
 `bash  Miniconda3-latest-Linux-x86_64.sh`
 
 
-Set up the conda channels in this order:
+
+3. Set up the conda channels in this order:
 ```
 conda config --add channels defaults
 conda config --add channels bioconda
 conda config --add channels conda-forge
 ```
 
-Activate the environment
+
+4. Activate the environment
 ```
 conda activate /lustre/nobackup/WUR/ABGC/shared/pipelines_version2/envs/population-mapping-version2
 ```