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Commit 4e8d5867 authored by Lensing, Kim's avatar Lensing, Kim
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Update README.md

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[Step by step guide on how to use my pipelines](https://carolinapb.github.io/2021-06-23-how-to-run-my-pipelines/)
Click [here](https://github.com/CarolinaPB/snakemake-template/blob/master/Short%20introduction%20to%20Snakemake.pdf) for an introduction to Snakemake
#### Create conda environmet:
```
conda env create --name <name-of-pipeline> --file population-variant-calling.yml
```
This environment contains snakemake and the other packages that are needed to run the pipeline.
#### Activate environmet:
```
conda activate <name-of-pipeline>
conda activate /lustre/nobackup/WUR/ABGC/shared/pipelines_version2/envs/population-mapping-version2
```
#### Create HPC config file:
Necessary for snakemake to prepare and send jobs.
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