Update README.md

README.md

@@ -55,7 +55,7 @@ BUSCO_LINEAGE:
   - <lineage>
 
 # genome alignment parameters:
-COMPARISON_GENOME: 
+COMPARISON_GENOME (to plot against the new assembly): 
   <species>: /path/to/genome/fasta
 
 # filter alignments less than cutoff X bp