Activity · Schipstal, Job van / CADD_pipeline_v2 · GitLab

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1 month ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

581fc982 · Added guide to README and updated usage section
... and 2 more commits. Compare 4603a009...581fc982

1 month ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

4603a009 · increase default rule memory allocation to 2GB

1 month ago

Schipstal, Job van @job.vanschipstal

pushed new tag bioRxiv_version at Schipstal, Job van / CADD_pipeline_v2

7 months ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

5b91ecd6 · Add readme

7 months ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

002e6819 · Add overview figure

7 months ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

848bdeed · Add license

7 months ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

3a3b090c · Second version of CADD pipeline

7 months ago

Schipstal, Job van @job.vanschipstal

pushed new tag Thesis_beta at Schipstal, Job van / CADD_pipeline_v2

1 year ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

e4db5291 · Seed RNG for variant simulation to make results more reproducible a...

2 years ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

6d858bb7 · Split indel and snp variant simulation since we only need the much ...
... and 1 more commit. Compare 9be9cf19...6d858bb7

2 years ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

9be9cf19 · Add basic profile to enable conda by default and limit concurrent c...

2 years ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

8a385432 · Remove old version scripts and snakefiles

2 years ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

57224c42 · Add new modules to testing main Snakefile

2 years ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

e83d0622 · Moved simulate_variants to new conda env and switch to trimming var...
... and 1 more commit. Compare 7991275f...e83d0622

2 years ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

7991275f · Added snakemfile for training and testing the sklearn logistic regr...
... and 1 more commit. Compare 62ae39a9...7991275f

2 years ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

62ae39a9 · Add testing annotation configuration files
... and 1 more commit. Compare eb8a1197...62ae39a9

2 years ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

eb8a1197 · Changed envs and added merging and gerp downloading to generate_ann...
... and 1 more commit. Compare cb461843...eb8a1197

2 years ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

cb461843 · Changed conda envs, (wildcard) formatting for alignment processing ...

2 years ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

2ba1ae34 · Cleaned up derive_variants and check for quality of reference position
... and 3 more commits. Compare 4bb4cad4...2ba1ae34

2 years ago

Schipstal, Job van @job.vanschipstal

pushed to branch main at Schipstal, Job van / CADD_pipeline_v2

4bb4cad4 · Add shell script to run vep and preprocess the position output
... and 2 more commits. Compare 4c3a6946...4bb4cad4