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Commit db8d0de8 authored by Adriaens, Ines's avatar Adriaens, Ines :v_tone2:
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changelog overview of packages for segmentation

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**date**: November 21, 2022
**author**: Ines Adriaens
## Overview tools for changepoint analysis
**Ruptures**
------------
[documentation](https://centre-borelli.github.io/ruptures-docs/)
[user guide] (https://centre-borelli.github.io/ruptures-docs/user-guide/)
[code](https://github.com/deepcharles/ruptures)
[manuscript](http://www.laurentoudre.fr/publis/TOG-SP-19.pdf)
- exact and approximate changepoint detection for segmentation of non-stationary signals;
- PELT available (Pruned Exact Linear Time)
- different cost functions (mean, median, mean/cov, linear, etc) available
- not too well documented / explained
- works with multivariate data, but not well documented
- still active
**sdt-python**
--------------
[documentation](https://schuetzgroup.github.io/sdt-python/index.html)
[code](https://github.com/schuetzgroup/sdt-python)
[zenodo, doi](https://zenodo.org/record/7078957#.Y3uN1XbMKUk)
- developed for processing of fluorescence microscopic images
- more restricted use for
- PELT available, also Bayesian offline and online methods
- last update 2020
**Changepy**
------------
[documentation](
[code](https://github.com/ruipgil/changepy)
[R package](https://github.com/rkillick/changepoint/)
- PELT alone implemented
- last update in 2017
- gateway for the R package rKillick cpt
- restricted number of cost functions available, incl. mean, var, meanvar, poisson and exponential
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### Choice
**ruptures**
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