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Adriaens, Ines
BAIT
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db8d0de8
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Adriaens, Ines
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changelog overview of packages for segmentation
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**date**
: November 21, 2022
**author**
: Ines Adriaens
## Overview tools for changepoint analysis
**Ruptures**
------------
[
documentation
](
https://centre-borelli.github.io/ruptures-docs/
)
[user guide] (https://centre-borelli.github.io/ruptures-docs/user-guide/)
[
code
](
https://github.com/deepcharles/ruptures
)
[
manuscript
](
http://www.laurentoudre.fr/publis/TOG-SP-19.pdf
)
-
exact and approximate changepoint detection for segmentation of non-stationary signals;
-
PELT available (Pruned Exact Linear Time)
-
different cost functions (mean, median, mean/cov, linear, etc) available
-
not too well documented / explained
-
works with multivariate data, but not well documented
-
still active
**sdt-python**
--------------
[
documentation
](
https://schuetzgroup.github.io/sdt-python/index.html
)
[
code
](
https://github.com/schuetzgroup/sdt-python
)
[
zenodo, doi
](
https://zenodo.org/record/7078957#.Y3uN1XbMKUk
)
-
developed for processing of fluorescence microscopic images
-
more restricted use for
-
PELT available, also Bayesian offline and online methods
-
last update 2020
**Changepy**
------------
[
documentation
](
[code](https://github.com/ruipgil/changepy
)
[
R package
](
https://github.com/rkillick/changepoint/
)
-
PELT alone implemented
-
last update in 2017
-
gateway for the R package rKillick cpt
-
restricted number of cost functions available, incl. mean, var, meanvar, poisson and exponential
--------------------------------------------------------------
### Choice
**ruptures**
\ No newline at end of file
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