Let cross_match.manyreads show why it fails

code/run_HighDseg.pl

@@ -55,7 +55,7 @@ chdir($dir);
 open (F_sh, ">run") || die "can not write file run\n";
 if (0 == $align_tool) {
 	for (my $i=1; $i<=$Nfiles; $i++) {
-		print F_sh "cross_match.manyreads leaf.$i.fa ../$read_file -masklevel 101 -minmatch 17 -minscore 30 $max_hit 2>/dev/null |ConvertAlign.pl -s $hit_size -i $hit_ident -t $align_tool |HighDseg -s $hit_size -i $hit_ident -d $depth >$i.bk &\n";
+		print F_sh "cross_match.manyreads leaf.$i.fa ../$read_file -masklevel 101 -minmatch 17 -minscore 30 $max_hit | ConvertAlign.pl -s $hit_size -i $hit_ident -t $align_tool |HighDseg -s $hit_size -i $hit_ident -d $depth >$i.bk &\n";
 	}
 }
 else {