changed stuff

index OLD.md

----
-layout: default
----
-
-# pathogenflows
-
-## Installation
-
-The latest version of pathogenflows can be installed from github (if you don't have the package **devtools**, you will need to install it first):
-
-``` r
-# install.packages("devtools")
-devtools::install_github('mverbyla/pathogenflows')
-```
-
-## About
-
-The **getLoadings** function allows you to predict annual loadings of water pathogens from the onsite sanitation system technologies used in a given region of the world. 
-
-![PathogenFlows](https://raw.githubusercontent.com/mverbyla/pathogenflows/master/images/pft_flow_chart.png)
-
-| Pathogen Loadings               | Description          |
-|:--------------------------|:---------------------------|
-| Excreted                       | Number of pathogens excreted per year   |
-| To groundwater             | Number of pathogens emitted to groundwater each year   |
-| To the surface                 | Number of pathogens emitted to the surface each year      |
-| Retained in subsurface    | Number of pathogens retained in the subsurface each year |
-| Decayed/inactivated        | Number of pathogens inactivated per year | 
-| Conveyed in fecal sludge to treatment   | Number of pathogens conveyed each year to treatment in fecal sludge |
-| Conveyed in sewerage to treatment   | Number of pathogens conveyed each year to treatment in sewerage | 
-
-The 'getLoadings' 
-
-
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-# Header 1
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-This is a normal paragraph following a header. GitHub is a code hosting platform for version control and collaboration. It lets you and others work together on projects from anywhere.
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-## Header 2
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-> This is a blockquote following a header.
->
-> When something is important enough, you do it even if the odds are not in your favor.
-
-### Header 3
-
-```js
-// Javascript code with syntax highlighting.
-var fun = function lang(l) {
-  dateformat.i18n = require('./lang/' + l)
-  return true;
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-```
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-#### Header 4
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-*   This is an unordered list following a header.
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-*   This is an unordered list following a header.
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-2.  This is an ordered list following a header.
-3.  This is an ordered list following a header.
-
-###### Header 6
-
-| head1        | head two          | three |
-|:-------------|:------------------|:------|
-| ok           | good swedish fish | nice  |
-| out of stock | good and plenty   | nice  |
-| ok           | good `oreos`      | hmm   |
-| ok           | good `zoute` drop | yumm  |
-
-### There's a horizontal rule below this.
-
-* * *
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-### Here is an unordered list:
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-*   Item foo
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-### And an ordered list:
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-1.  Item one
-1.  Item two
-1.  Item three
-1.  Item four
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-### And a nested list:
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-- level 1 item
-  - level 2 item
-  - level 2 item
-    - level 3 item
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-- level 1 item
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-  - level 2 item
-- level 1 item
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-- level 1 item
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-### Small image
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-![Octocat](https://github.githubassets.com/images/icons/emoji/octocat.png)
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-### Large image
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-![Branching](https://raw.githubusercontent.com/mverbyla/pathogenflows/master/images/pft_flow_chart.png)
-
-
-### Definition lists can be used with HTML syntax.
-
-<dl>
-<dt>Name</dt>
-<dd>Godzilla</dd>
-<dt>Born</dt>
-<dd>1952</dd>
-<dt>Birthplace</dt>
-<dd>Japan</dd>
-<dt>Color</dt>
-<dd>Green</dd>
-</dl>
-
-```
-Long, single-line code blocks should not wrap. They should horizontally scroll if they are too long. This line should be long enough to demonstrate this.
-```
-
-```
-The final element.
-```