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Commit bb6bf662 authored by Nauta, Lisanne's avatar Nauta, Lisanne
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uncomment lines

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R/getLoadings.R
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......@@ -19,10 +19,10 @@ getLoadings<-function(inputDF=read.csv("data/input_file_new_kla_div_20200728.csv
df1<-inputDF
#comment out these lines after testing
df1<-df1[,c(1:42)]
colnames(df1)<-c(colnames(df1[,c(1:19)]),substr(colnames(df1[,c(20:42)]),1,nchar(colnames(df1[,c(20:42)]))-4))
colnames(df1)
df1$excreted<-c(1e10,1e10,1e10,1e10,1e10)
# df1<-df1[,c(1:42)]
# colnames(df1)<-c(colnames(df1[,c(1:19)]),substr(colnames(df1[,c(20:42)]),1,nchar(colnames(df1[,c(20:42)]))-4))
# colnames(df1)
# df1$excreted<-c(1e10,1e10,1e10,1e10,1e10)
#comment out these lines after testing
pathogenGroups<-c("Virus","Bacteria","Protozoa","Helminth")
......
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