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Commit 03debe12 authored by Matthew Verbyla's avatar Matthew Verbyla
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comment out lines

parent 6d3b3016
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......@@ -19,10 +19,10 @@ getLoadings<-function(inputDF=read.csv("data/input_file_new_kla_div_20200728.csv
df1<-inputDF
#comment out these lines after testing
df1<-df1[,c(1:42)]
colnames(df1)<-c(colnames(df1[,c(1:19)]),substr(colnames(df1[,c(20:42)]),1,nchar(colnames(df1[,c(20:42)]))-4))
colnames(df1)
df1$excreted<-c(1e10,1e10,1e10,1e10,1e10)
#df1<-df1[,c(1:42)]
#colnames(df1)<-c(colnames(df1[,c(1:19)]),substr(colnames(df1[,c(20:42)]),1,nchar(colnames(df1[,c(20:42)]))-4))
#colnames(df1)
#df1$excreted<-c(1e10,1e10,1e10,1e10,1e10)
#comment out these lines after testing
pathogenGroups<-c("Virus","Bacteria","Protozoa","Helminth")
......
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