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Created with Raphaël 2.2.027Mar9Oct13Jul10Jan919Sep9Aug13Jul20Oct20Apr1518Feb163Dec22Nov1920Oct191615141369Sep18Aug17330Jul282722212017161514816Jun9529MayAdded instructions to install the project dependencies using renv in the README file.mapping-toolmapping-toolMerge branch 'mapping-tool.rc1' into mapping-toolRemoved rgdal dependency. Added renv lockfile to install all dependencies required to run the model. Lockfile does not include packages required to run the plumber api. Updated Readme.Not sure what has been changed.Change in pathogenflows_land_water_separated.R to make WWTP worksmapping-tool-ba…mapping-tool-bacteriatestAdd pathogen-bacteria, pathogen emission seperate to land and to waterUpdated Readme. Updated submodule reference.updated submodule.updated submoduleFixed two bugs:Merge branch 'mapping-tool' of https://git.wur.nl/glowpa/glowpa-model into mapping-toolHighlighting some to do things.Land emissions were not included in the overall gridded emissions. These have now been included.Updated readme.txt filemapping_add_liv…mapping_add_livestockLog info of async subprocesses.Solving a replace 0.00001 issue, as the full stop was read as any character.Never mind, it was correct anyway.Forgot to uncomment something.Reading in the WWTP data from the parsed data. Also fixed the zoom for the local png plots.Removed the as.character for a specific column in human_data in pathogenflows.R to other comments also, right after the data is read in in api.R.Read the gid in as.characterMoved the total calculation from the plotter to the pathogenflows script.Corrected the plotter for level 4 for the fact that more areas are selected than the ones in human_data only.Replace the value provided by the model as missing (0.00001) with NA.Minor change, removed log 10 calculation, that is now done in plotter for level 4 exceptionfeature_Level_4…feature_Level_4_exceptionAdded plotter exception for level 4 and changed way of plotting.Add na.rm=TRUE to sum function that was missing.Removed the log10 calculation of emissions and added it to the plotter for the level 4 exceptionmerge mapping toolRemoved a print of an intermediate .csv that helped solve bugs and I forgot to remove earlier.Corrected small error in order of function.Merge branch 'feature-plot-extent' into mapping-toolFeat: plotter accepts a plot extent.Added the level 4 exception (no grid is made for that; ideally the model will still be changed that gridded input data also doesn't have to be provided), where still required the compostingTwinSlab and compostingTwinNoSlab were removed and the totals become NA when they should be NA and 0 when they are 0. Finally, the WWTP script now actually reads in the emitted data from the input file rather than the generalised data for the treatment type.Added gadm level to scenarioAdded model input and the local environment to the gitignoreAdded Nynkes bugfix to gitFix issue. missing and is.null cannot be combined in 1 condition.- Changed background color of maps to gray