Commits · master · Gebretsadkan, Samuel / BiG-SCAPE · GitLab

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Nov 06, 2017
- Merge branch 'html_visualization' into 'master' · 0361a539
  Kautsar, Satria authored 7 years ago
  0361a539
- Added placeholder (+dummy data) for bgc-family alignment information · ef8b4451
  Kautsar, Satria authored 7 years ago
  
  ef8b4451
Oct 31, 2017
- Merge branch 'html_visualization' into 'master' · a9cb9baa
  Kautsar, Satria authored 7 years ago
  a9cb9baa
- Move html output folders into each networks output folder (i.e. networks_all,... · c7f60b2d
  Kautsar, Satria authored 7 years ago
  c7f60b2d
Oct 18, 2017
- Merge branch 'html_visualization' into 'master' · 1642b3ed
  Kautsar, Satria authored 7 years ago
  1642b3ed
- implement domain color · d42b9109
  Kautsar, Satria authored 7 years ago
  
  d42b9109
- 1.Make filter 'selected' selected by default · 2172bf65
  Satria Ardhe Kautsar authored 7 years ago
  2172bf65
- fix issue of 'cached' networks · f26f9761
  Satria Ardhe Kautsar authored 7 years ago
  
  f26f9761
- Merge branch 'html_visualization' into 'master' · fa54dd9a
  Kautsar, Satria authored 7 years ago
  fa54dd9a
- Merge branch 'master' into html_visualization · 5772afee
  Satria Ardhe Kautsar authored 7 years ago
  
  5772afee
Oct 17, 2017
- Finalized first version of html output · 404dd95a
  Kautsar, Satria authored 7 years ago
  
  404dd95a
- Enable views by results cutoff instead of classes · 04201496
  Kautsar, Satria authored 7 years ago
  
  04201496
Oct 16, 2017
- Minor change: silence info on whether a bgc is in a contig edge unless given the -v parameter · c9e6c580
  Jorge Navarro Muñoz authored 7 years ago
  
  c9e6c580
- Bugfix: forgot to output startA,startB values for totally unrelated BGC pairs · d99cf141
  Jorge Navarro Muñoz authored 7 years ago
  
  d99cf141
- template generation for html output · 38509b24
  Kautsar, Satria authored 7 years ago
  
  38509b24
Oct 11, 2017
- Small speedup for LCS + planning for BiG-SCAPE's visualization · 2aacd067
  Jorge Navarro Muñoz authored 7 years ago
  2aacd067
Oct 10, 2017
- New comparison mode and code cleanup · 0c717f82
  Jorge Navarro Muñoz authored 7 years ago
  0c717f82
- Bugfix: GCC calling crashed if there was only a single GCF · dba3b72c
  Jorge Navarro Muñoz authored 7 years ago
  
  dba3b72c
Sep 29, 2017
- Feature: also add Organism info in Network_Annotation · 7f56a8c8
  Jorge Navarro Muñoz authored 7 years ago
  
  7f56a8c8
Sep 28, 2017
- Feature: add taxonomy from original input file into Networks_Annotation · d20d142e
  Jorge Navarro Muñoz authored 7 years ago
  
  d20d142e
- Bugfix: fix typo from previous commit · 6c2ec1df
  Jorge Navarro Muñoz authored 7 years ago
  
  6c2ec1df
Sep 27, 2017
- Improved detection of Saccharide BGCs · 4c4dc0d0
  Jorge Navarro Muñoz authored 7 years ago
  
  4c4dc0d0
Sep 26, 2017
- Improvements and bugfixes · c428ec54
  Jorge Navarro Muñoz authored 7 years ago
  c428ec54
Sep 13, 2017
- LCS: make the code more Python3-compatible · 639cc4f4
  Jorge Navarro Muñoz authored 7 years ago
  
  639cc4f4
- Code cleanup, deleted old files, added (Annotated!) MIBiG reference bgcs (1.3) · 89b869a4
  Jorge Navarro Muñoz authored 7 years ago
  89b869a4
- Merge branch 'lcs' into 'master' · 6ade8949
  Jorge Navarro Muñoz authored 7 years ago
  6ade8949
- Merge branch 'master' into 'lcs' · 957a0540
  Jorge Navarro Muñoz authored 7 years ago
  957a0540
- Merge branch 'clans_clustering' into 'master' · 6f8ef97d
  Jorge Navarro Muñoz authored 7 years ago
  6f8ef97d
Sep 12, 2017
- change to js writing file to avoid bug in visualization · 49d294b9
  Emzo de los Santos authored 7 years ago
  
  49d294b9
- changed clans clustering based on the changes we discussed: · ace9893a
  Emzo de los Santos authored 7 years ago
  ace9893a
- Python 3 compatible code. With many thanks to Wouter Lokhorst · 00e1dc64
  Jorge Navarro Muñoz authored 7 years ago
  00e1dc64
- Merge branch 'master' of https://git.wageningenur.nl/medema-group/BiG-SCAPE · a5cae741
  Jorge Navarro Muñoz authored 7 years ago
  
  a5cae741
- BiG-SCAPE: default location for anchor_domains file is same as BiG-SCAPE. Also, · 06c46d74
  Jorge Navarro Muñoz authored 7 years ago
  06c46d74
Sep 07, 2017
- Implement LCS mode. Use to try to cope with fragmented BGCs that may overlap · deba3829
  Jorge Navarro Muñoz authored 7 years ago
  deba3829
Aug 28, 2017
- Installation Guide: more info on pySAPC · 1e0ff863
  Jorge Navarro Muñoz authored 7 years ago
  
  1e0ff863
Aug 22, 2017
- added code for clustering families into clans · add0c3e0
  Emzo de los Santos authored 7 years ago
  
  add0c3e0
Aug 21, 2017
- Merge branch 'master' of https://git.wageningenur.nl/medema-group/BiG-SCAPE · de217e80
  Jorge Navarro Muñoz authored 7 years ago
  
  de217e80
- Internal: BGC data is now passed using a new 'bgc_data' object instead of a tuple · 02fa4a8d
  Jorge Navarro Muñoz authored 7 years ago
  
  02fa4a8d
Aug 18, 2017
- Parameters: clarified help text of --no_classify parameter (thanks to Giang-Son Nguyen) · f5c1fc2c
  Jorge Navarro Muñoz authored 7 years ago
  
  f5c1fc2c
Aug 10, 2017
- fixed bug in json file generator for gene direction · 1ba0bb33
  Emzo de los Santos authored 7 years ago
  
  1ba0bb33