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# Image analysis

This repository contains several workflows related to different (automated) image analysis workflows, mainly optimized for the study of protoplasts. We will continue to update this repo when new workflows are developed.

## ProtoplastViability

Workflow to calculate the viability of protoplasts based on a FDA assay. The workflow consits of a ImageJ/Fiji macro  to deal with images, and a python script to calculate the viability based on the Fiji macro output.