Update README.md

README.md

@@ -70,6 +70,33 @@ There are two ways to install required R packages for this analysis;
     install.packages("plyr", dependencies = TRUE)
     library(plyr)
     }
+    
+    if (!require("backports")) {
+    install.packages("backports", dependencies = TRUE)
+    library(backports)
+    }
+    
+    if (!require("devtools")) {
+    install.packages("devtools", dependencies = TRUE)
+    library(devtools)
+    }
+    
+    if (!is.installed("qgg"))
+    {
+    options(devtools.install.args=" --no-multiargs")
+    devtools::install_github("psoerensen/qgg")
+    library(qgg)
+    }
+
+    if (!require("GO.db")) {
+    install.packages("GO.db", dependencies = TRUE)
+    library(GO.db)
+    }
+        
+    if (!require("org.At.tair.db")) {
+    install.packages("org.At.tair.db", dependencies = TRUE)
+    library(org.At.tair.db)
+    }    
 
 # 2- Phenotype Dataset Preparation
 We first calculated Best Linear Unbiased Estimates (BLUEs) for genotypic means, used as phentoypes in the BLUP models using 'BLUES.R' script.