Explore projects

nemmap is a single-command pipeline to process bacterial (full 16S) or fungal (full ITS) reads obtained by Nanopore sequencing. This pipeline is developed and intended for internal use by the Laboratory of Nematology (WUR).

HPC Deployment toolbox used at WUR for Anunna

PanTools, WUR Bioinformatics

FLiTrak3D (or FLIT for “FLight Insect Tracker”) is a Python package that prepare video recordings to be used by DeepLabCut (simple 2D/3D tracking, cropping and stitching). Then use DeepLabCut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

A pipeline that:

Downloads data from the Veenkampen Creates statistics based on the data

The following inputs can be defined by the user:

API key: Variable selection (what to download) Time range (start & end date) Statistics of choice