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Welcome to the central open-source repository of LPJmL at PIK. You are free to download the code under the AGPLv3 license, see LICENSE file. Have fun. Please note that there is absolutely no support outside agreed collaborations. We also don't provide any input data, which is derived from other sources.

HPC Deployment toolbox used at WUR for Anunna

nemmap is a single-command pipeline to process bacterial (full 16S) or fungal (full ITS) reads obtained by Nanopore sequencing. This pipeline is developed and intended for internal use by the Laboratory of Nematology (WUR).

NEmatology DNA Variant Analysis and Calling pipeline = NEDVAC

NEmatology RNA Variant Analysis and Calling pipeline = NERVAC

Basic definition files for containers

Main aim is to provide tools for tracing flooding events in the Netherlands. The emphasis is on water damage caused by large amounts of rain.

Scripts to retrieve and distribute the latest BLAST databases from NCBI

Management Strategy Evaluation for Indian Ocean swordfish (SWO)