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PanTools, WUR Bioinformatics

HPC Deployment toolbox used at WUR for Anunna

Repository for Python raster GIS library with low memory requirements

A simple template repository for python projects

The script focuses on assessing tree vitality trends in urban areas of the Netherlands using high-resolution satellite data and vegetation indices. It employs tree segmentation, trend analysis with weighted linear regression, and classification based on slope values. The methodology enables scalable monitoring of tree health and stress, providing valuable insights for urban forestry management and planning.

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

Procedure voor het ontwikkelen van de 'windturbine zichtbaarheidskaart'.

Het MNP model zelf.

Postprocessing --

CNN methods that estimate the diameter of the crop, even when it's occluded.

A bunch of Python scripts used to make life easier when segmenting many callus images.

Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.

The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.