Explore projects

Snakemake pipeline to do QC on short reads and k-mer based genome estimation for genome size, heterozygosity, ploidy and repeat content on both short reads and PacBio HiFi data.

Data entry facility for digital solution and service providers to register digital solutions for agriculture deployed in low- and middle-income countries or to update existing data in our database

Monitoring digital developments for agricultural transformation worldwide

transcriptional timeseries experiment on the NIH project with the Kammenga and Bettinger Lab

The script focuses on assessing tree vitality trends in urban areas of the Netherlands using high-resolution satellite data and vegetation indices. It employs tree segmentation, trend analysis with weighted linear regression, and classification based on slope values. The methodology enables scalable monitoring of tree health and stress, providing valuable insights for urban forestry management and planning.

Data and code for the summerschool Image Processing for Plant Phenotyping