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This is an adaptation of CloudSPAdes which uses taxonomical annotation of reads additionally to linked reads.

modified version of seqtk to include 'name' column (column 4) from BED file in fastq header when using subseq

RSnode from CommonSense project

GRIND for MATLAB is a modelling platform that supports ordinary differential equations, difference equations, delay differential equations (DDE), vector models and matrices (cellular automata).