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This is a repository for configuration files, and pre- and postprocessing tools for LPJmL runs @WUR. For the model itself, check out the official LPJmL repository maintained by PIK. To get started, check out the Wiki.

CatchCam is the software of the Catchcam hardware

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard index, a modified Domain Duplicate Score and the Goodman-Kruskal gamma function)

Rest application serving the monoliths images used in the World Soil Museum website.

generic python modules and utilities

Exercise 2 Stijn and Cipo (Marco B. - If running makes no sense)

Series of scripts developed part of the Rationally designed microbiomes project.

MGnify UHGG from EBI integration with SAPP conversion

Simulation pipeline for generation of artificial polyploid genomes, estimation of their haplotypes from Next Generation Sequencing data using HapTree, HapCompass and SDhap, and finally evaluation of the estimation accuracy.

Happy - Haplotype assembly using Next-generation Sequencing (NGS) reads.

Using the a sequence of human poses and object category that is being moved by the person, for a given Scenario, this module generates model to predict the activity carried out by the person.

Analysis code repository for the minor thesis project at BIF group. Topic: Using machine learning to predict underlying factors for plant meiotic recombination rate variation Supervisor: Aalt-Jan van Dijk