Explore projects

Scripts to retrieve and distribute the latest BLAST databases from NCBI

Simulation pipeline for generation of artificial polyploid genomes, estimation of their haplotypes from Next Generation Sequencing data using HapTree, HapCompass and SDhap, and finally evaluation of the estimation accuracy.

Happy - Haplotype assembly using Next-generation Sequencing (NGS) reads.

Install script for geoscripting course 2018

Haplotype estimation tool for polyploids using NGS data of related individuals

Family-based estimation of polyploid haplotypes using short sequence reads

This repository is set-up for the further development and application of the snowpack chemistry and exchange model orginally developed by Murray et al. to study in-snowpack chemical cycling and exchange of ozone, NOx and other reactive compounds.

CIHEAM course material

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard index, a modified Domain Duplicate Score and the Goodman-Kruskal gamma function)

Install script for geoscripting course 2018

CatchCam is the software of the Catchcam hardware

Reliable CNV detection in plant genomes

S2I template for R shiny builds