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nemmap is a single-command pipeline to process bacterial (full 16S) or fungal (full ITS) reads obtained by Nanopore sequencing. This pipeline is developed and intended for internal use by the Laboratory of Nematology (WUR).

Welcome to the central open-source repository of LPJmL at WUR.

HPC Deployment toolbox used at WUR for Anunna

NEmatology RNA Variant Analysis and Calling pipeline = NERVAC

NEmatology DNA Variant Analysis and Calling pipeline = NEDVAC

Management Strategy Evaluation for Indian Ocean swordfish (SWO)

Basic definition files for containers