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Plotting utilities for proteins

My take on how I would design the RNA-seq pipeline and differential gene expression analysis.

BSc Thesis Erik IJland

The code for discovering novel gcGC's in publicly available genomes can be found here.

Pipeline to rank multiple putative BGC assemblies as those generated by biosyntheticSpades when there are multiple possible paths in the assembly graph. Code is derived by an early version of BiG-SCAPE [https://git.wur.nl/medema-group/BiG-SCAPE]