Explore projects

project for testing code and messing around

A pipeline to align multiple whole genomes

This is an adaptation of CloudSPAdes which uses taxonomical annotation of reads additionally to linked reads.

Reinforcement Learning agent that uses sarsa q learning algorithm to learn how to optimize greenhouse management.

A multiple protein structure alignment and feature extraction suite

scripts and data to reproduce the figures in the manuscript Christian Groß et al. pCADD: SNV prioritisation in Sus scrofa

Code accompanying the paper "Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases"

Plotting utilities for proteins

My take on how I would design the RNA-seq pipeline and differential gene expression analysis.

BSc Thesis Erik IJland