Explore projects

Assorted genomic analysis pipelines

Multiple protein structure alignment and feature extraction suite

Happy - haplotype inference in polyploid species

Seq2species fork adapted to my thesis

Notice when things change and mail about it.

project for testing code and messing around

A pipeline to align multiple whole genomes

This is an adaptation of CloudSPAdes which uses taxonomical annotation of reads additionally to linked reads.

Reinforcement Learning agent that uses sarsa q learning algorithm to learn how to optimize greenhouse management.

A multiple protein structure alignment and feature extraction suite

scripts and data to reproduce the figures in the manuscript Christian Groß et al. pCADD: SNV prioritisation in Sus scrofa

Code accompanying the paper "Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases"