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Repository for Python raster GIS library with low memory requirements

PanTools, WUR Bioinformatics

This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.

Basic definition files for containers

HPC Deployment toolbox used at WUR for Anunna

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

Postprocessing --

CNN methods that estimate the diameter of the crop, even when it's occluded.

Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.

The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.

A script for retrieval of SMILES chemical data of compounds produced by Biosynthetic Gene Clusters. Data is gathered from the MIBiG repository (single package with all entries in JSON format)

Calculate the diversity of your gene clusters! Using hmmscan to find the pfam domains. Jaccard, DDS, GK as distance metrics including sequence similarity as a modifier. It outputs tab delimited network files that can be visualized in Cytoscape.

BAIT - a tool for breakpoint analysis and inference of time series

EleQTL (WormQTL2) dataset preparation scripts

video machinelearning using yolov3 on windows 10