Explore projects
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Blok, Pieter / SizeCNN
Apache License 2.0CNN methods that estimate the diameter of the crop, even when it's occluded.
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Multi Reclass Tool for geospatial rasters.
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Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.
The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.
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A script for retrieval of SMILES chemical data of compounds produced by Biosynthetic Gene Clusters. Data is gathered from the MIBiG repository (single package with all entries in JSON format)
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Calculate the diversity of your gene clusters! Using hmmscan to find the pfam domains. Jaccard, DDS, GK as distance metrics including sequence similarity as a modifier. It outputs tab delimited network files that can be visualized in Cytoscape.
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video machinelearning using yolov3 on windows 10
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This project is containing some code and data for the tutorial on 3D plant phenotyping at the Summerschool on Application of Machine Learning in Plant Sciences, 12–16 September 2022, Einsiedeln, Switzerland.
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FoodInformatics / msx-tool
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
ISRIC / dsm-general / dsm.workflows / seedling
GNU General Public License v3.0 or laterUpdated -
Durairaj, Janani / caretta
BSD 3-Clause "New" or "Revised" LicenseMultiple protein structure alignment and feature extraction suite
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This is an adaptation of CloudSPAdes which uses taxonomical annotation of reads additionally to linked reads.
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A package that prepare video recordings to be used by deeplabcut (simple 2D/3D tracking, cropping and stitching). Then use deeplabcut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates
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