GitLab

Detect specific sequences in nanopore squiggles, no basecalling required

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

Various code related to the Landschapsmonitorproject Openheid indicator. Project members: Wim van Nieuwenhuizen (PM), Janien vd Greft, Henk Meeuwsen & Hans Roelofsen

CNN methods that estimate the diameter of the crop, even when it's occluded.

Python models and scripts used for analysing geospatial data for the 'Natuurrapportage 2019' for the province of Zeeland. Made by Hans Roelofsen, team Biodiversiteit & Beleid, Wageningen Environmental Research

Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.

The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.

A script for retrieval of SMILES chemical data of compounds produced by Biosynthetic Gene Clusters. Data is gathered from the MIBiG repository (single package with all entries in JSON format)

Calculate the diversity of your gene clusters! Using hmmscan to find the pfam domains. Jaccard, DDS, GK as distance metrics including sequence similarity as a modifier. It outputs tab delimited network files that can be visualized in Cytoscape.

This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.

EleQTL (WormQTL2) dataset preparation scripts

video machinelearning using yolov3 on windows 10

Template for WUR beamer presentations, based on http://www.petervanbeveren.eu/latex/

Generic project for public access containers

Basic RMarkdown/hugo website for the Open Science Community Wageningen (OSC-W) using GitLab Pages.

Multiple protein structure alignment and feature extraction suite