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Snakemake pipeline to do QC on short reads and k-mer based genome estimation for genome size, heterozygosity, ploidy and repeat content on both short reads and PacBio HiFi data.

Family-based estimation of polyploid haplotypes using short sequence reads

Phyloseq application that transforms Study HDT files into input files for phyloseq.

NEmatology RNA Variant Analysis and Calling pipeline = NERVAC

Easily compute and visualise synteny between multiple genomes

NEmatology DNA Variant Analysis and Calling pipeline = NEDVAC