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This is a repository for configuration files, and pre- and postprocessing tools for LPJmL runs @WUR. For the model itself, check out the official LPJmL repository maintained by PIK. To get started, check out the Wiki.
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Benden, Daniel / catchcam
GNU General Public License v2.0 or laterCatchCam is the software of the Catchcam hardware
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Kautsar, Satria / BiG-SCAPE
GNU Affero General Public License v3.0Biosynthetic Genes Similarity Clustering and Prospecting Engine.
Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard index, a modified Domain Duplicate Score and the Goodman-Kruskal gamma function)
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WBVR_PathogenOmics / Rational_designed_microbiome
GNU General Public License v3.0 or laterSeries of scripts developed part of the Rationally designed microbiomes project.
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Pronk, Lotte / Whokaryote
GNU Affero General Public License v3.0Updated -
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Impellizzeri, Cipo / Geoscripting Exercise 2
Creative Commons Zero v1.0 UniversalExercise 2 Stijn and Cipo (Marco B. - If running makes no sense)
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Willemsen, Johan / Happy-haplotype-assembly
GNU General Public License v3.0 onlyHappy - Haplotype assembly using Next-generation Sequencing (NGS) reads.
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