Explore projects

MSc Thesis: Investigating Plant-nematode interaction using spatial transcriptomics

An automated pipeline to generate CADD scores.

Public access to WoSIS standardised data (ISRIC, WDC Soils)

The script focuses on assessing tree vitality trends in urban areas of the Netherlands using high-resolution satellite data and vegetation indices. It employs tree segmentation, trend analysis with weighted linear regression, and classification based on slope values. The methodology enables scalable monitoring of tree health and stress, providing valuable insights for urban forestry management and planning.

FLiTrak3D (or FLIT for “FLight Insect Tracker”) is a Python package that prepare video recordings to be used by DeepLabCut (simple 2D/3D tracking, cropping and stitching). Then use DeepLabCut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

Dynamic Ecosystem Model Oosterschelde

Postprocessing --