Explore projects

ACT project for the masters programme Geo-Information Science at Wageningen University & Research, conducted for the Dutch Ministry of Defence

FSPM_BASIC model. Simulation of above and below ground plant growth and architectural development, driven by intra- and interspecific competition for light and nutrients.

Easily compute and visualise synteny between multiple genomes

R toolkit for working with variant data

The script focuses on assessing tree vitality trends in urban areas of the Netherlands using high-resolution satellite data and vegetation indices. It employs tree segmentation, trend analysis with weighted linear regression, and classification based on slope values. The methodology enables scalable monitoring of tree health and stress, providing valuable insights for urban forestry management and planning.

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

Dynamic Ecosystem Model Oosterschelde

Het MNP model zelf.

FLiTrak3D (or FLIT for “FLight Insect Tracker”) is a Python package that prepare video recordings to be used by DeepLabCut (simple 2D/3D tracking, cropping and stitching). Then use DeepLabCut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates