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Scripts, data, and results files from my MSc Bioinformatics thesis. Not supported after Aug 31 2022

Pipeline to rank multiple putative BGC assemblies as those generated by biosyntheticSpades when there are multiple possible paths in the assembly graph. Code is derived by an early version of BiG-SCAPE [https://git.wur.nl/medema-group/BiG-SCAPE]

Simulation pipeline for generation of artificial polyploid genomes, estimation of their haplotypes from Next Generation Sequencing data using HapTree, HapCompass and SDhap, and finally evaluation of the estimation accuracy.

Scripts and files for data analysis of dataset 1 (by Roxann) - behaviour and spatial data

OrV QTL mapping analysis