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A script for retrieval of SMILES chemical data of compounds produced by Biosynthetic Gene Clusters. Data is gathered from the MIBiG repository (single package with all entries in JSON format)

Calculate the diversity of your gene clusters! Using hmmscan to find the pfam domains. Jaccard, DDS, GK as distance metrics including sequence similarity as a modifier. It outputs tab delimited network files that can be visualized in Cytoscape.

BAIT - a tool for breakpoint analysis and inference of time series

EleQTL (WormQTL2) dataset preparation scripts

video machinelearning using yolov3 on windows 10

Generic project for public access containers

NER-CNS Pipeline is the Nematology Expression RNA-seq Counts Normalization pipeline using Snakemake This repository is the RNA sequence counts/TPMs/FPKMs pipeline.

This project is containing some code and data for the tutorial on 3D plant phenotyping at the Summerschool on Application of Machine Learning in Plant Sciences, 12–16 September 2022, Einsiedeln, Switzerland.

Multiple protein structure alignment and feature extraction suite

This is an adaptation of CloudSPAdes which uses taxonomical annotation of reads additionally to linked reads.

Project for ACT module

This is a git to host code and data for the MSc course Machine Learning at the Wageningen University