Explore projects

An automated pipeline to generate CADD scores.

FSPM_BASIC model. Simulation of above and below ground plant growth and architectural development, driven by intra- and interspecific competition for light and nutrients.

Python library and GUI for managing genetic pedigree data

video machinelearning using yolov3 on windows 10

Generic project for public access containers

MSc Thesis: Investigating Plant-nematode interaction using spatial transcriptomics

ACT project for the masters programme Geo-Information Science at Wageningen University & Research, conducted for the Dutch Ministry of Defence

A script for retrieval of SMILES chemical data of compounds produced by Biosynthetic Gene Clusters. Data is gathered from the MIBiG repository (single package with all entries in JSON format)

This project is containing some code and data for the tutorial on 3D plant phenotyping at the Summerschool on Application of Machine Learning in Plant Sciences, 12–16 September 2022, Einsiedeln, Switzerland.

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.