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Hugo website for the Open Science Community Wageningen (OSC-W) using GitLab Pages.
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FoodInformatics / msx-tool
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
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Kautsar, Satria / BiG-SCAPE
GNU Affero General Public License v3.0Biosynthetic Genes Similarity Clustering and Prospecting Engine.
Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard index, a modified Domain Duplicate Score and the Goodman-Kruskal gamma function)
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Helfenstein, Anatol / BIS-4D
Creative Commons Attribution 4.0 InternationalUpdated -
ITIS Blackboard / wur-item-layout
Creative Commons Attribution Non Commercial Share Alike 4.0 InternationalUpdated -
rhizoSMASH / rhizosmash
GNU Affero General Public License v3.0Bacterial genome mining tool for gene clusters related to rhizosphere competence. Web server available at https://rhizosmash.bioinformatics.nl
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Lokhorst, Wouter / BiG-SCAPE
GNU Affero General Public License v3.0Biosynthetic Genes Similarity Clustering and Prospecting Engine.
Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)
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Aflitos, Saulo Alves / bionanoconverter
MIT LicenseUpdated -
Gebretsadkan, Samuel / BiG-SCAPE
GNU Affero General Public License v3.0Biosynthetic Genes Similarity Clustering and Prospecting Engine.
Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)
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The code for discovering novel gcGC's in publicly available genomes can be found here.
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