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This is an adaptation of CloudSPAdes which uses taxonomical annotation of reads additionally to linked reads.

CNN methods that estimate the diameter of the crop, even when it's occluded.

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

This git contains the scripts and the information related to the publication: https://doi.org/10.1016/j.synbio.2025.03.001

Spark standalone clusters on SLURM