Explore projects

The code for discovering novel gcGC's in publicly available genomes can be found here.

A multiple protein structure alignment and feature extraction suite

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

Community specific and use case specific commandline and graphical clients for iRODS.

A concept for a BrAPI discovery node. Written in Python, Flask-based.

FLiTrak3D (or FLIT for “FLight Insect Tracker”) is a Python package that prepare video recordings to be used by DeepLabCut (simple 2D/3D tracking, cropping and stitching). Then use DeepLabCut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

Pipeline to rank multiple putative BGC assemblies as those generated by biosyntheticSpades when there are multiple possible paths in the assembly graph. Code is derived by an early version of BiG-SCAPE [https://git.wur.nl/medema-group/BiG-SCAPE]