Explore projects

HPC Deployment toolbox used at WUR for Anunna

This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.

Basic definition files for containers

CNN methods that estimate the diameter of the crop, even when it's occluded.

An automated pipeline to generate CADD scores.

Application and tools for data analytics and visualizations

Easily compute and visualise synteny between multiple genomes

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

Spark standalone clusters on SLURM

Code and data for DOREN project; relation between vegetation growth and nitrogen deposition. By Hans Roelofsen, Wieger Wamelink, WEnR, team Biodiversiteit & Beleid. September 2019.

A pipeline to align multiple whole genomes