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HPC Deployment toolbox used at WUR for Anunna

This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.

Basic definition files for containers

An automated pipeline to generate CADD scores.

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

CNN methods that estimate the diameter of the crop, even when it's occluded.

Application and tools for data analytics and visualizations

Easily compute and visualise synteny between multiple genomes

Exercise 2 Stijn and Cipo (Marco B. - If running makes no sense)