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  • akdel001-master-patch-82787
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Created with Raphaël 2.2.023Aug2212109715Jun18Feb17831Jan16311Dec95Nov31Oct24221817161514107322Sep21201918161122Jul211918add TurtleTools link and deprecation noticemastermasterMerge pull request #2 from TurtleTools/devdevdevstyle(code): black reformatstyle(code): black reformatdocs(readme): added paper to readmerefactor(setup): fire -> typerfeat(app): cleanup and refactoring of app codedocs(readme): added logo and full title to readmefeat(MSA + CLI): cleanup + CLIrefactor(feature_extraction): cleanupfeat(logo): added logo pngrefactor(helper): removed unused code, cleaned uprefactor(old API): removed old coderefactor(score_functions): removed unused coderefactor(superposition_functions): switched to helper instead of score_functions for common_positionsAdd logo and paper to readmeAdd logo fileMerge pull request #1 from TurtleTools/devrefactor(multiple_alignment): added superposition_parameters as an attribute of StructureMultiplerefactor(all): Switch to public geometricus APIfix(score_functions): removed geometricus.utility dependencyfix(feature_extraction): removed geometricus.utility dependencyrefactor(all): switching to new geometricus API + code formattingrefactor(superposition_functions): added multiple_moment_superposerecreating multiple_alignment using score and superposition functionsadding scoring and superposition functionsremoving caretta helper and replacing with geometricus utilityrenaming for clarityadded mean function for shapesfingerprintsfingerprintsadded mean function for shapesadded mean function for shapesMerge branch 'fingerprints' into 'fingerprints'split up mean_coords and mean_weights functionsadded TODO for mean functionmany changesDocumentationcleaned up caretta APIchain addedchain addedchain added