static path changed for demo

caretta/feature_extraction.py

@@ -117,10 +117,11 @@ def get_features(pdb_file: str, dssp_dir: str, only_dssp=True, force_overwrite=T
     pdb_file = str(Path(dssp_dir) / f"{name}.pdb")
     pd.writePDB(pdb_file, protein)
     protein = pd.parsePDB(pdb_file)
+    # print(protein)
     dssp_file = Path(dssp_dir) / f"{name}.dssp"
     if force_overwrite or not dssp_file.exists():
         dssp_file = pd.execDSSP(str(pdb_file), outputname=name, outputdir=str(dssp_dir))
-    protein = pd.parseDSSP(dssp=dssp_file, ag=protein, parseall=True)
+    protein = pd.parseDSSP(dssp=str(dssp_file), ag=protein, parseall=True)
     data = get_dssp_features(protein)
     if only_dssp:
         return data