debug (removed njit)

caretta/neighbor_joining.py

@@ -13,7 +13,7 @@ import numpy as np
 #     5. Start the algorithm again, replacing the pair of joined neighbors with the new node and using the distances calculated in the previous step.
 
 
-@nb.njit
+# @nb.njit
 # @numba_cc.export('neighbor_joining', '(f64[:])')
 def neighbor_joining(distance_matrix: np.ndarray) -> (np.ndarray, np.ndarray):
     """
@@ -88,7 +88,7 @@ def neighbor_joining(distance_matrix: np.ndarray) -> (np.ndarray, np.ndarray):
 
 
 # Q matrix calculation + minimum i, j (step 1 & 2)
-@nb.njit
+# @nb.njit
 # @numba_cc.export('_find_join_nodes', '(f64[:])')
 def _find_join_nodes(distance_matrix):
     """
@@ -119,7 +119,7 @@ def _find_join_nodes(distance_matrix):
 
 
 # Branch length calculation (step 3)
-@nb.njit
+# @nb.njit
 # @numba_cc.export('_find_branch_length', '(f64[:], i64, i64)')
 def _find_branch_length(distance_matrix, i, j):
     """