init

README.md

beagle/beagle.03Jul18.40b.jar

breed_info/SampleIDs_Animal_Ids.tsv

breed_info/final_species_list.tsv

data/ROH/TG.map

data/ROH/TG.ped

data/SVs/Deletions.vcf.gz

data/SVs/Duplications.vcf.gz

data/backup/Chicken1.vcf.gz

data/backup/Chicken1.vep.vcf

data/backup/Chicken1.vep.vcf_summary.html

data/backup/Froh_TG.tsv

data/backup/MgalROH.hom

data/backup/MgalROH.hom.indiv

data/backup/MgalROH.hom.indiv.tsv

data/backup/MgalROH.hom.overlap

data/backup/MgalROH.hom.summary

data/backup/MgalROH.log

data/backup/PigROH_AVG_Length.pdf

data/backup/PigROH_Froh.pdf