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Created with Raphaël 2.2.013May87215Apr98428Mar2625211927Feb12129Nov201531Oct3029252126Sep4331Aug302823106231Jul27262524232013121020Jun121131May29252421181716151411926Apr25242321191812230Mar2216152Feb27Jan2611106519Dec162130Nov2824131010Jun97613Apr728Mar2523112111Feb98425Jan171211Dec8729Nov281918171615832122Oct211918319Julchanged the function calls in order to remove need of sth.DaCycle = DaCycle in start_job. achieved by adding DaCycle to particular function calls and initializing tm5 with DaCycle as call parameterwrite_members_to_file: is called with _lag_ instead of lag +1, as inside there was a "lag-1" call... that one removed from inside as wellordered imports (mainly moved to the top of the module)removed the body of if __name__ == "__main__", except analysis folderremoved StateVector.isOptimized and replaced with an "optimized" parameter in StateVector.write_to_file callremoved "oldstyle" and "newstyle" checkings from write_obs_to_file (it was added for debugging purposes at some point...)minor changescleanup - all function names (except sth in tools/rc) in lowercasemerged r1186 and r1218 into new version that works under current trunkChanged expand_mixingratios to allow R and HPHR to be either matrix or vector depending on algorithm choice (serial or bulk).Changed R and HPHR matrices to vectors for serial minimum least squares algorithm in optimizer to save memory (the routines needed only vectors). For the bulk algorithm this is not possible, so nothing was changed for that option.first round of "purification" of analysis files; with no influence on the rest of the coderolled back some changes to interface of callsnew routine to read old savestate files from ct07-ct11 runsNew forward pipeline introduced for running just transport + CTDAS frameworkadded new helper routines to make py/rc/jb filesAnother small fix logging localization when set to None...Small fix logging localization when set to NoneChanged the localization routine and settings, so that the localization is actually used. Also added some extra logging messages related to localization.Added platform file for capegrim serverSmall fix: int(nparams) instead of nparams (baseclasses/statevector.py)Restored saving of logfiles in exec folder (tools/initexit.py)too much deleted, now placed back in advanceThe code now tests for the presence of the optimizer file, which is False for the purely forward runs. If not present, some steps related to the forecast variables are skipped.try, except replace with if...elseMinor changes to flow of sample_step and sample_state. Caught a possible problem with the get_initialdata for the ObsOperator, which also needs to happen for an advance step.reverted to r1186 (the last one from 2012), with changes in observation files from r1192-1194 preservedCorrected reading in of may_reject and may_localize keys from sites_weights.rc, and option added to include only certain hours of the day (for obspack files containing hourly observations)Corrected reading in of may_reject and may_localize keys from sites_weights.rcCorrected reading in of may_reject and may_localize keys from sites_weights.rcminor changes Friday 1st Febremoved need for a DaCycle in ObsOperatorremoved need for dacycle from ct/obs, obspack, obspack_geocarbonall the DaCycle/DaSystem references removed from the classes of StateVectorBeginning of February: last commit before date management and cycle management changessome extra tests conductedexplicitly turn on flask sampling in ctdasminor changes needed for SF6 obspacks