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Created with Raphaël 2.2.08May30Apr29181728Mar212027Feb22211814131211754131Jan30292825232221151018Dec17141210764329Nov23212013129878Jun17Mar23Feb2159Dec11May29Apr1215Mar718Feb1714Jan17Nov21Oct25Sep2423218431Aug2420191815141328Jul222095125Jun24527May262221201915Apr10Mar26Feb22Jan713Oct25Jul1416May4Apr2Mar126Feb1931Jan30292819Dec16Oct27Aug2322212029Jul171615121030Jun282726252420171311107620May1387215Apr98428Mar2625211927Feb12129Nov201531Oct3029252126Sep4331Aug302823106231Jul27262524232013121020Jun121131May29252421181716151411926Apr25242321191812230Mar2216152Feb27Jan2611106519Dec162130Nov282413octe okocteall ok(1) changes to obspack_globalviewplus2.py: only observations that will be assimilated are read; reading of sites_file therefore moved forward to add_observations (2) changes to serial_minimum_least_squares in optimizer.py: inner loop to update samples replaced by array operations + addition of calculation observation part cost functionupdate statevector: zero-initialization gamma moved such that gamma is also initialized with value of predifined statevector, if read from fileupdate serial least squares optimizer: array operations instead of loop for update of samples9 regions, correlated with Lparallel updating of samplesdomain as 9 regions, fractional plant typeschange in reading of observations: sites.rc file read already in add_observations + cost function in optimizer calculated as sum instead of dot productparallel obs operatorupdated pipeline ctsf to write additional outputfiles at end of runinclude option to perform data assimilation with CO2 concentrations in ppm instead of mol fraction + updated statevector ecoregion selection to exclude olson landtypes = waterobs.scaling.factor to assimilate co2 obs in ppm, additional forecast step at end to get posterior samplesadd obs_obspack_gvplus2.pyexclude observations that will not be assimilated; allow for mixed initialization uncertainty statevectorfixed error with timevec?fixed links to analysis folder in analysis pipelineadded branch liesbeth/ctsf