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Created with Raphaël 2.2.019Feb181412117Jan10Nov6128Oct2715Sep144123Aug8May16Feb7631Jan29262569Dec25Nov22125Oct211917131116Sep987624Jun131May2927262520191817543228Apr22Mar2117161411107410Feb11May26Apr138Merge remote-tracking branch 'origin/development' into developmentdevelopmentdevelopmentAllow use of rotate_and_translate_skeleton3d for limbs in cost functionRemoved part of the code in skeleton_fitting.py that was commented out for a whileMoved cost functions out of animals modules in optimiser.py and made flexible for all casesMinor changes to readmeAdd new animal skeleton for dragonflies (one body + two pairs of wings)Updated plots to allow for plotting mutliple limbsUpdated requirements.txtRemove plot_limb (unecessary)Made it default to read images as if (graysclae or color) and add option to convert to grayscale (8bit)Allow the useage of 8bit imagesUpdated and corrected test_skeleton_fitterAdded update of wing params with body params valuesCorrected first estimation of insect body and wing parametersFixed wrong image path for plotting images with 2d points before and after optimization + minor changes to improve graphMake matplotlib use tkagg backendFixed bug with min and max computed on both axis instead of only the firts oneFixed bug with min and max computed on both axis instead of only the firts oneFixed bug when multiple _full.pickle files but not all with 'obj' in nameFixed bug when missing_frames = NoneAdded dynamic crop parameter in yaml fileAdded images for readme.mdMade it default to read images as if (graysclae or color) and add option to convert to grayscale (8bit)Allow the useage of 8bit imagesAdded dynamic crop parameter in yaml fileCorrected description of package for readme.mdUpdated params of butterworth filterUpdated param_names_to_keep_cst in various modulesMinor changes onf body and limbs modulesUpdated and corrected test_skeleton_fitterCorrected sign for stroke2wing rotationAdded update of wing params with body params valuesMade y coordinates of wing contour positiveCorrected first estimation of insect body and wing parametersAdd option to not show plot right nowFixed wrong image path for plotting images with 2d points before and after optimization + minor changes to improve graphMake matplotlib use tkagg backendFixed bug with min and max computed on both axis instead of only the firts oneFixed bug with min and max computed on both axis instead of only the firts oneInitialisation of batch processing was running multiprocessing