demo re enabled

scripts/median_polish/median_polish.py

@@ -8,6 +8,7 @@ import os
 import argparse
 
 #prefix=median_polish.py.lycopersicum_subtract
+#prefix=median_polish.py.lycopersicum
 #rm $prefix.00.*
 #cat $prefix.??.tsv > $prefix.00.tsv
 #cat $prefix.01.tsv.median.grand_effect.tsv > $prefix.00.tsv.median.grand_effect.tsv
@@ -18,6 +19,7 @@ import argparse
 #./median_polish.py $prefix.00.tsv
 #./median_polish.py -p -xr 90 -c "0,S.lyc LA2706,1,S.lyc LA2838A,2,S.lyc PI406760,3,S.lyc LA1090,4,S.lyc EA00325,5,S.lyc EA00488,6,S.lyc EA00375,7,S.lyc EA00371,8,S.lyc LA2463,9,S.lyc LYC1969,10,S.lyc LYC1738,11,S.lyc LYC3476,12,S.lyc TR00003,13,S.lyc LYC1343,14,S.lyc LYC3306,15,S.lyc EA01155,16,S.lyc EA01049,17,S.lyc LYC3153,18,S.lyc EA03222,19,S.lyc PI129097,20,S.lyc PI272654,21,S.lyc EA00990,22,S.lyc EA00157,23,S.lyc EA02054,24,S.lyc PI303721,25,S.lyc LA4451,26,S.lyc V710029,27,S.lyc PC11029,28,S.lyc PI93302,29,S.lyc SG16,30,S.lyc EA1088,31,S.lyc PI203232,32,S.lyc PI131117,33,S.lyc LA1324,34,S.lyc PI158760,35,S.lyc LA0113,36,S.lyc LYC1410,37,S.lyc PI695588,38,S.lyc LYC2962,39,S.lyc LYC2910,40,S.lyc LYC2740,41,S.lyc TR00018,42,S.lyc EA00940,43,S.lyc TR00019,44,S.lyc EA01019,45,S.lyc TR00020,46,S.lyc EA01037,47,S.lyc TR00021,48,S.lyc TR00022,49,S.lyc TR00023,50,S.lyc EA01640,51,S.lyc LA4133,52,S.lyc LA1421,53,S.lyc LA1479" -r 0,01,92,02,143,03,209,04,275,05,342,06,390,07,457,08,522,09,591,10,657,11,712,12 median_polish.py.lycopersicum_subtract.00.tsv
 #./median_polish.py -p -fsa 11 -T 'S. lycopersicum' -xr 90 -cf names_cols.csv -rf names_rows.csv median_polish.py.lycopersicum_subtract.00.tsv
+#./median_polish.py -p -fsa 11 -T 'S. lycopersicum' -xr 90 -cf names_cols.csv -rf names_rows.csv median_polish.py.lycopersicum.00.tsv
 
 
 
@@ -471,10 +473,10 @@ def runDemo( args ):
 
     data_files = [
             #"arizona.csv", "ripley.csv", "youtube.csv", "solanum.tsv",
-            #"lycopersicum.01.tsv", "lycopersicum.02.tsv", "lycopersicum.03.tsv", "lycopersicum.04.tsv",
-            #"lycopersicum.05.tsv", "lycopersicum.06.tsv", "lycopersicum.07.tsv", "lycopersicum.08.tsv",
-            #"lycopersicum.09.tsv", "lycopersicum.10.tsv", "lycopersicum.11.tsv", "lycopersicum.12.tsv",
-            #"lycopersicum.tsv",
+            "lycopersicum.01.tsv", "lycopersicum.02.tsv", "lycopersicum.03.tsv", "lycopersicum.04.tsv",
+            "lycopersicum.05.tsv", "lycopersicum.06.tsv", "lycopersicum.07.tsv", "lycopersicum.08.tsv",
+            "lycopersicum.09.tsv", "lycopersicum.10.tsv", "lycopersicum.11.tsv", "lycopersicum.12.tsv",
+            "lycopersicum.tsv",
             "lycopersicum_subtract.01.tsv", "lycopersicum_subtract.02.tsv", "lycopersicum_subtract.03.tsv", "lycopersicum_subtract.04.tsv",
             "lycopersicum_subtract.05.tsv", "lycopersicum_subtract.06.tsv", "lycopersicum_subtract.07.tsv", "lycopersicum_subtract.08.tsv",
             "lycopersicum_subtract.09.tsv", "lycopersicum_subtract.10.tsv", "lycopersicum_subtract.11.tsv", "lycopersicum_subtract.12.tsv",