venvlin updated

venvlin/bin/activate

@@ -39,7 +39,7 @@ deactivate () {
 # unset irrelevant variables
 deactivate nondestructive
 
-VIRTUAL_ENV="/home/assembly/progs/flask/rnaseqviewer/python/venvlin"
+VIRTUAL_ENV="/home/assembly/nobackup/ui/venvlin"
 export VIRTUAL_ENV
 
 _OLD_VIRTUAL_PATH="$PATH"

venvlin/bin/activate.csh

@@ -7,12 +7,12 @@ alias deactivate 'test $?_OLD_VIRTUAL_PATH != 0 && setenv PATH "$_OLD_VIRTUAL_PA
 # Unset irrelevant variables.
 deactivate nondestructive
 
-setenv VIRTUAL_ENV "/home/assembly/progs/flask/rnaseqviewer/python/venvlin"
+setenv VIRTUAL_ENV "/home/assembly/nobackup/ui/venvlin"
 
 set _OLD_VIRTUAL_PATH="$PATH"
 setenv PATH "$VIRTUAL_ENV/bin:$PATH"
 
-set _OLD_VIRTUAL_PROMPT="$prompt"
+
 
 if ("" != "") then
     set env_name = ""
@@ -25,7 +25,15 @@ else
         set env_name = `basename "$VIRTUAL_ENV"`
     endif
 endif
-set prompt = "[$env_name] $prompt"
+
+# Could be in a non-interactive environment,
+# in which case, $prompt is undefined and we wouldn't
+# care about the prompt anyway.
+if ( $?prompt ) then
+    set _OLD_VIRTUAL_PROMPT="$prompt"
+    set prompt = "[$env_name] $prompt"
+endif
+
 unset env_name
 
 alias pydoc python -m pydoc

venvlin/bin/activate.fish

@@ -32,7 +32,7 @@ end
 # unset irrelevant variables
 deactivate nondestructive
 
-set -gx VIRTUAL_ENV "/home/assembly/progs/flask/rnaseqviewer/python/venvlin"
+set -gx VIRTUAL_ENV "/home/assembly/nobackup/ui/venvlin"
 
 set -gx _OLD_VIRTUAL_PATH $PATH
 set -gx PATH "$VIRTUAL_ENV/bin" $PATH

venvlin/bin/easy_install

-#!/home/assembly/progs/flask/rnaseqviewer/python/venvlin/bin/python
-# EASY-INSTALL-ENTRY-SCRIPT: 'setuptools==0.6c11','console_scripts','easy_install'
-__requires__ = 'setuptools==0.6c11'
+#!/home/assembly/nobackup/ui/venvlin/bin/python
+# EASY-INSTALL-ENTRY-SCRIPT: 'distribute==0.6.34','console_scripts','easy_install'
+__requires__ = 'distribute==0.6.34'
 import sys
 from pkg_resources import load_entry_point
 
-sys.exit(
-   load_entry_point('setuptools==0.6c11', 'console_scripts', 'easy_install')()
-)
+if __name__ == '__main__':
+    sys.exit(
+        load_entry_point('distribute==0.6.34', 'console_scripts', 'easy_install')()
+    )

venvlin/bin/easy_install-2.7

-#!/home/assembly/progs/flask/rnaseqviewer/python/venvlin/bin/python
-# EASY-INSTALL-ENTRY-SCRIPT: 'setuptools==0.6c11','console_scripts','easy_install-2.7'
-__requires__ = 'setuptools==0.6c11'
+#!/home/assembly/nobackup/ui/venvlin/bin/python
+# EASY-INSTALL-ENTRY-SCRIPT: 'distribute==0.6.34','console_scripts','easy_install-2.7'
+__requires__ = 'distribute==0.6.34'
 import sys
 from pkg_resources import load_entry_point
 
-sys.exit(
-   load_entry_point('setuptools==0.6c11', 'console_scripts', 'easy_install-2.7')()
-)
+if __name__ == '__main__':
+    sys.exit(
+        load_entry_point('distribute==0.6.34', 'console_scripts', 'easy_install-2.7')()
+    )

venvlin/bin/pip

-#!/home/assembly/progs/flask/rnaseqviewer/python/venvlin/bin/python
-# EASY-INSTALL-ENTRY-SCRIPT: 'pip==1.2.1','console_scripts','pip'
-__requires__ = 'pip==1.2.1'
+#!/home/assembly/nobackup/ui/venvlin/bin/python
+# EASY-INSTALL-ENTRY-SCRIPT: 'pip==1.3.1','console_scripts','pip'
+__requires__ = 'pip==1.3.1'
 import sys
 from pkg_resources import load_entry_point
 
 sys.exit(
-   load_entry_point('pip==1.2.1', 'console_scripts', 'pip')()
+   load_entry_point('pip==1.3.1', 'console_scripts', 'pip')()
 )

venvlin/bin/pip-2.7

-#!/home/assembly/progs/flask/rnaseqviewer/python/venvlin/bin/python
-# EASY-INSTALL-ENTRY-SCRIPT: 'pip==1.2.1','console_scripts','pip-2.7'
-__requires__ = 'pip==1.2.1'
+#!/home/assembly/nobackup/ui/venvlin/bin/python
+# EASY-INSTALL-ENTRY-SCRIPT: 'pip==1.3.1','console_scripts','pip-2.7'
+__requires__ = 'pip==1.3.1'
 import sys
 from pkg_resources import load_entry_point
 
 sys.exit(
-   load_entry_point('pip==1.2.1', 'console_scripts', 'pip-2.7')()
+   load_entry_point('pip==1.3.1', 'console_scripts', 'pip-2.7')()
 )

venvlin/bin/python2

+python
\ No newline at end of file

venvlin/bin/python2.7

+python
\ No newline at end of file

venvlin/lib/python2.7/config

-/usr/lib/python2.7/config
\ No newline at end of file
+config-x86_64-linux-gnu
\ No newline at end of file

venvlin/lib/python2.7/config-x86_64-linux-gnu

+/usr/lib/python2.7/config-x86_64-linux-gnu/
\ No newline at end of file

venvlin/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/EGG-INFO/SOURCES.txt

+CHANGES.txt
+CONTRIBUTORS.txt
+DEVGUIDE.txt
+MANIFEST.in
+README.txt
+distribute_setup.py
+easy_install.py
+launcher.c
+pkg_resources.py
+release.py
+setup.cfg
+setup.py
+site.py
+_markerlib/__init__.py
+_markerlib/markers.py
+distribute.egg-info/PKG-INFO
+distribute.egg-info/SOURCES.txt
+distribute.egg-info/dependency_links.txt
+distribute.egg-info/entry_points.txt
+distribute.egg-info/top_level.txt
+distribute.egg-info/zip-safe
+docs/Makefile
+docs/conf.py
+docs/easy_install.txt
+docs/index.txt
+docs/pkg_resources.txt
+docs/python3.txt
+docs/roadmap.txt
+docs/setuptools.txt
+docs/using.txt
+docs/_templates/indexsidebar.html
+docs/_theme/nature/theme.conf
+docs/_theme/nature/static/nature.css_t
+docs/_theme/nature/static/pygments.css
+docs/build/html/_sources/easy_install.txt
+docs/build/html/_sources/index.txt
+docs/build/html/_sources/pkg_resources.txt
+docs/build/html/_sources/python3.txt
+docs/build/html/_sources/roadmap.txt
+docs/build/html/_sources/setuptools.txt
+docs/build/html/_sources/using.txt
+docs/build/html/_static/basic.css
+docs/build/html/_static/nature.css
+docs/build/html/_static/pygments.css
+setuptools/__init__.py
+setuptools/archive_util.py
+setuptools/cli-32.exe
+setuptools/cli-64.exe
+setuptools/cli.exe
+setuptools/depends.py
+setuptools/dist.py
+setuptools/extension.py
+setuptools/gui-32.exe
+setuptools/gui-64.exe
+setuptools/gui.exe
+setuptools/package_index.py
+setuptools/sandbox.py
+setuptools/script template (dev).py
+setuptools/script template.py
+setuptools/command/__init__.py
+setuptools/command/alias.py
+setuptools/command/bdist_egg.py
+setuptools/command/bdist_rpm.py
+setuptools/command/bdist_wininst.py
+setuptools/command/build_ext.py
+setuptools/command/build_py.py
+setuptools/command/develop.py
+setuptools/command/easy_install.py
+setuptools/command/egg_info.py
+setuptools/command/install.py
+setuptools/command/install_egg_info.py
+setuptools/command/install_lib.py
+setuptools/command/install_scripts.py
+setuptools/command/register.py
+setuptools/command/rotate.py
+setuptools/command/saveopts.py
+setuptools/command/sdist.py
+setuptools/command/setopt.py
+setuptools/command/test.py
+setuptools/command/upload.py
+setuptools/command/upload_docs.py
+setuptools/tests/__init__.py
+setuptools/tests/doctest.py
+setuptools/tests/py26compat.py
+setuptools/tests/server.py
+setuptools/tests/test_bdist_egg.py
+setuptools/tests/test_build_ext.py
+setuptools/tests/test_develop.py
+setuptools/tests/test_dist_info.py
+setuptools/tests/test_easy_install.py
+setuptools/tests/test_markerlib.py
+setuptools/tests/test_packageindex.py
+setuptools/tests/test_resources.py
+setuptools/tests/test_sandbox.py
+setuptools/tests/test_sdist.py
+setuptools/tests/test_test.py
+setuptools/tests/test_upload_docs.py
+setuptools/tests/win_script_wrapper.txt
+setuptools/tests/indexes/test_links_priority/external.html
+setuptools/tests/indexes/test_links_priority/simple/foobar/index.html
+tests/api_tests.txt
+tests/install_test.py
+tests/manual_test.py
+tests/test_distribute_setup.py
+tests/shlib_test/hello.c
+tests/shlib_test/hello.pyx
+tests/shlib_test/hellolib.c
+tests/shlib_test/setup.py
+tests/shlib_test/test_hello.py
\ No newline at end of file

venvlin/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/EGG-INFO/dependency_links.txt

+

venvlin/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/EGG-INFO/entry_points.txt

+[distutils.commands]
+bdist_rpm = setuptools.command.bdist_rpm:bdist_rpm
+rotate = setuptools.command.rotate:rotate
+develop = setuptools.command.develop:develop
+setopt = setuptools.command.setopt:setopt
+build_py = setuptools.command.build_py:build_py
+saveopts = setuptools.command.saveopts:saveopts
+egg_info = setuptools.command.egg_info:egg_info
+register = setuptools.command.register:register
+upload_docs = setuptools.command.upload_docs:upload_docs
+install_egg_info = setuptools.command.install_egg_info:install_egg_info
+alias = setuptools.command.alias:alias
+easy_install = setuptools.command.easy_install:easy_install
+install_scripts = setuptools.command.install_scripts:install_scripts
+bdist_wininst = setuptools.command.bdist_wininst:bdist_wininst
+bdist_egg = setuptools.command.bdist_egg:bdist_egg
+install = setuptools.command.install:install
+test = setuptools.command.test:test
+install_lib = setuptools.command.install_lib:install_lib
+build_ext = setuptools.command.build_ext:build_ext
+sdist = setuptools.command.sdist:sdist
+
+[egg_info.writers]
+dependency_links.txt = setuptools.command.egg_info:overwrite_arg
+requires.txt = setuptools.command.egg_info:write_requirements
+PKG-INFO = setuptools.command.egg_info:write_pkg_info
+eager_resources.txt = setuptools.command.egg_info:overwrite_arg
+top_level.txt = setuptools.command.egg_info:write_toplevel_names
+namespace_packages.txt = setuptools.command.egg_info:overwrite_arg
+entry_points.txt = setuptools.command.egg_info:write_entries
+depends.txt = setuptools.command.egg_info:warn_depends_obsolete
+
+[console_scripts]
+easy_install = setuptools.command.easy_install:main
+easy_install-2.7 = setuptools.command.easy_install:main
+
+[setuptools.file_finders]
+svn_cvs = setuptools.command.sdist:_default_revctrl
+
+[distutils.setup_keywords]
+dependency_links = setuptools.dist:assert_string_list
+entry_points = setuptools.dist:check_entry_points
+extras_require = setuptools.dist:check_extras
+use_2to3_exclude_fixers = setuptools.dist:assert_string_list
+package_data = setuptools.dist:check_package_data
+install_requires = setuptools.dist:check_requirements
+use_2to3 = setuptools.dist:assert_bool
+use_2to3_fixers = setuptools.dist:assert_string_list
+include_package_data = setuptools.dist:assert_bool
+exclude_package_data = setuptools.dist:check_package_data
+namespace_packages = setuptools.dist:check_nsp
+test_suite = setuptools.dist:check_test_suite
+eager_resources = setuptools.dist:assert_string_list
+zip_safe = setuptools.dist:assert_bool
+test_loader = setuptools.dist:check_importable
+packages = setuptools.dist:check_packages
+convert_2to3_doctests = setuptools.dist:assert_string_list
+tests_require = setuptools.dist:check_requirements
+
+[setuptools.installation]
+eggsecutable = setuptools.command.easy_install:bootstrap
+

venvlin/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/EGG-INFO/top_level.txt

+_markerlib
+easy_install
+pkg_resources
+setuptools
+site

venvlin/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/EGG-INFO/zip-safe

+

venvlin/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/_markerlib/__init__.py

+try:
+    import ast
+    from _markerlib.markers import default_environment, compile, interpret
+except ImportError:
+    if 'ast' in globals():
+        raise
+    def default_environment():
+        return {}
+    def compile(marker):
+        def marker_fn(environment=None, override=None):
+            # 'empty markers are True' heuristic won't install extra deps.
+            return not marker.strip()
+        marker_fn.__doc__ = marker
+        return marker_fn
+    def interpret(marker, environment=None, override=None):
+        return compile(marker)()

venvlin/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/_markerlib/markers.py

+# -*- coding: utf-8 -*-
+"""Interpret PEP 345 environment markers.
+
+EXPR [in|==|!=|not in] EXPR [or|and] ...
+
+where EXPR belongs to any of those:
+
+    python_version = '%s.%s' % (sys.version_info[0], sys.version_info[1])
+    python_full_version = sys.version.split()[0]
+    os.name = os.name
+    sys.platform = sys.platform
+    platform.version = platform.version()
+    platform.machine = platform.machine()
+    platform.python_implementation = platform.python_implementation()
+    a free string, like '2.6', or 'win32'
+"""
+
+__all__ = ['default_environment', 'compile', 'interpret']
+
+import ast
+import os
+import platform
+import sys
+import weakref
+
+_builtin_compile = compile
+
+try:
+    from platform import python_implementation
+except ImportError:
+    if os.name == "java":
+        # Jython 2.5 has ast module, but not platform.python_implementation() function.
+        def python_implementation():
+            return "Jython"
+    else:
+        raise
+
+
+# restricted set of variables
+_VARS = {'sys.platform': sys.platform,
+         'python_version': '%s.%s' % sys.version_info[:2],
+         # FIXME parsing sys.platform is not reliable, but there is no other
+         # way to get e.g. 2.7.2+, and the PEP is defined with sys.version
+         'python_full_version': sys.version.split(' ', 1)[0],
+         'os.name': os.name,
+         'platform.version': platform.version(),
+         'platform.machine': platform.machine(),
+         'platform.python_implementation': python_implementation(),
+         'extra': None # wheel extension
+        }
+
+def default_environment():
+    """Return copy of default PEP 385 globals dictionary."""
+    return dict(_VARS)
+
+class ASTWhitelist(ast.NodeTransformer):
+    def __init__(self, statement):
+        self.statement = statement # for error messages
+
+    ALLOWED = (ast.Compare, ast.BoolOp, ast.Attribute, ast.Name, ast.Load, ast.Str)
+    # Bool operations
+    ALLOWED += (ast.And, ast.Or)
+    # Comparison operations
+    ALLOWED += (ast.Eq, ast.Gt, ast.GtE, ast.In, ast.Is, ast.IsNot, ast.Lt, ast.LtE, ast.NotEq, ast.NotIn)
+
+    def visit(self, node):
+        """Ensure statement only contains allowed nodes."""
+        if not isinstance(node, self.ALLOWED):
+            raise SyntaxError('Not allowed in environment markers.\n%s\n%s' %
+                               (self.statement,
+                               (' ' * node.col_offset) + '^'))
+        return ast.NodeTransformer.visit(self, node)
+
+    def visit_Attribute(self, node):
+        """Flatten one level of attribute access."""
+        new_node = ast.Name("%s.%s" % (node.value.id, node.attr), node.ctx)
+        return ast.copy_location(new_node, node)
+
+def parse_marker(marker):
+    tree = ast.parse(marker, mode='eval')
+    new_tree = ASTWhitelist(marker).generic_visit(tree)
+    return new_tree
+
+def compile_marker(parsed_marker):
+    return _builtin_compile(parsed_marker, '<environment marker>', 'eval',
+                   dont_inherit=True)
+
+_cache = weakref.WeakValueDictionary()
+
+def compile(marker):
+    """Return compiled marker as a function accepting an environment dict."""
+    try:
+        return _cache[marker]
+    except KeyError:
+        pass
+    if not marker.strip():
+        def marker_fn(environment=None, override=None):
+            """"""
+            return True
+    else:
+        compiled_marker = compile_marker(parse_marker(marker))
+        def marker_fn(environment=None, override=None):
+            """override updates environment"""
+            if override is None:
+                override = {}
+            if environment is None:
+                environment = default_environment()
+            environment.update(override)
+            return eval(compiled_marker, environment)
+    marker_fn.__doc__ = marker
+    _cache[marker] = marker_fn
+    return _cache[marker]
+
+def interpret(marker, environment=None):
+    return compile(marker)(environment)