several

behavior.py

ftp/lib/Plugins/compression.py

ftp/lib/Plugins/contamination.py

ftp/lib/Plugins/fastqc.py

ftp/lib/Plugins/quals.py

ftp/lib/Plugins/shared.py

ftp/lib/constants.py

ftp/lib/templateOdf/odfParser.py

ftp/lib/templater.py

ftp/lib/tools.py

ftp/prepareFtpFiles.py

pipeline/progs/Quake/bin/quake.py

pipeline/runReal

pipeline/wrappers/dynamictrim_wrapper.py

pipeline/wrappers/fastqCount_wrapper.py

pipeline/wrappers/fastqc_wrapper.py

pipeline/wrappers/filter454_wrapper.py

pipeline/wrappers/jellyfish_wrapper.py

pipeline/wrappers/mkplot_wrapper.py

pipeline/wrappers/quake_wrapper.py