Skip to content
Snippets Groups Projects

Repository graph

You can move around the graph by using the arrow keys.
Select Git revision
  • master default protected
1 result
Created with Raphaël 2.2.024Mar1687632128Feb2714726Jan1221Dec1918171614222Nov19example code with tenx includedmastermasterlrsim compiled inside the docker imagefixed double sex in make_tenxMerge branch 'master' of git.wur.nl:aflit001/LRSIMUse username instead of hardcoded namesAdded test configuration.delete old files; MAKEFILE: no fragment list as default; call make_tenx if MAKE_TENX variable set; create tenx report; PARSEREPORT: do not fail if tenx folder does not exists; OTHERS: rename run.sh scriptsadded timelink to genomescape; correct timezone; expose all ports; clean.sh fixed; corrected genomescape out folder; touch files if they existskmc and genomescopeadded support to gatk, multithread and coresadd prefix to makefile to allow separate independent projects; allow for longranger alingno VCF callingadded read length parameterMAKEFILE: disable vcf; make ports optional; link denovo report; PARSER: added help information in output filesMAKEFILE: ports not compulsory; possibility to send to backgroundLONGEST: print stats; create symlink if no change; create compressed file if compressed input; adapted makefileMAKEFILE: sort config filenames and print targets and prereqs; REPORT: parse config files; print empty columnsgeneralized makefilereport parserservers and ports workingreorder makefileclean docker; genomescopedocker codealmost makingadd user specified fragment size distributionallow haplotype FASTAs as user inputseparated parameters for translocationscommented use libupdated commentsimproved commentschange repo namechange repo nameadd expected outputadd ecoli as test caseadd ecoli as test caseremove parameter fileadd parameters.DS_Store banished!add log routine