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Created with Raphaël 2.2.015Feb1413125Jan16Added warning message in the READMEmainmainRemoved personal email adressUpdate SnakefileRemoved useless comment stringsequencing depth bug fixesMinor bug fixFirst try to fix errors. Have to test if it worksRemove idepth log file automatically and open correct annotation file while making heatmapFixed bug regarding PCA visualisation scriptFixed bug regarding script referencesMinor bug fixMinor bug fixFixed PCA output directoriesAdded .gitkeep files to add empty directories to the projectFixed minor bug regarding script reference in SnakefileFixed minor bug fixes regarding script refferenceFixed minor bugs regarding annotation fileFixed minor bugs regarding the annotation file Minor tweaksUpdated readmeAdded Snakefile. Will download project and test if everything is workingAdded R scrips used for visualisationFixed directory of README and annotation.shAdded the script used to transform the Sscrofa annotation file into one that is usable by the pipelineMade minor changes to the readme for readability.Made minor changes to the readme for readability.Made minor changes to the readme for readability.Made minor changes to the readme for readability.Made minor changes to the readme for readability.Uploaded the thesis written about the pipeline to give the user a greater insight into the output, functionality, and limitations.Initial commit