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Commit d15658b3 authored by Heuer, Hannelore's avatar Heuer, Hannelore
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added amino acid groups

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pPro.ttl
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− 101
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......@@ -40,14 +40,6 @@ ppro:Aldehyde
skos:note "In organic chemistry, an aldehyde is an organic compound containing a functional group with the structure R−CH=O" ;
skos:prefLabel "Aldehyde" ;
.
ppro:AliphaticSide-Chain
a owl:Class ;
a sh:NodeShape ;
rdfs:label "Aliphatic side-chain" ;
rdfs:subClassOf ppro:AminoAcid ;
skos:note "Amino acids of which the side chains (R group) only contain C and H. They do not ionize" ;
skos:prefLabel "Aliphatic side-chain" ;
.
ppro:Alkaloid
a owl:Class ;
rdfs:label "Alkaloid" ;
......@@ -70,14 +62,6 @@ ppro:Alkene
skos:note "An alkene is a hydrocarbon containing a carbon–carbon double bond." ;
skos:prefLabel "Alkene" ;
.
ppro:AmideSide-Chain
a owl:Class ;
a sh:NodeShape ;
rdfs:label "Amide side-chain" ;
rdfs:subClassOf ppro:AminoAcid ;
skos:note "Amino acids that have amide side-chains." ;
skos:prefLabel "Amide side-chain" ;
.
ppro:AminoAcid
a owl:Class ;
rdfs:comment "https://en.wikipedia.org/wiki/Amino_acid" ;
......@@ -86,13 +70,11 @@ ppro:AminoAcid
skos:note "Amino acids are organic compounds that contain amino (−NH3+) and carboxylate (−CO2-) functional groups, along with a side chain (R group) specific to each amino acid. They are the building blocks of peptides and proteins" ;
skos:prefLabel "Amino acid" ;
.
ppro:AnionicSide-Chain
ppro:AminoAcidGroup
a owl:Class ;
a sh:NodeShape ;
rdfs:label "Anionic side-chain" ;
rdfs:subClassOf ppro:AminoAcid ;
skos:note "Amino acids that have side-chains that are anions at ordinary pH. These amino acids are often referred to as carboxyllic acids but a more correct term is carboxylate" ;
skos:prefLabel "Anionic side-chain" ;
rdfs:label "Amino acid group" ;
rdfs:subClassOf owl:Thing ;
skos:prefLabel "Amino acid group" ;
.
ppro:AromaticHydrocarbon
a owl:Class ;
......@@ -101,22 +83,6 @@ ppro:AromaticHydrocarbon
skos:note "Aromatic hydrocarbons are a special class of unsaturated hydrocarbon based on a six carbon ring moiety called benzene." ;
skos:prefLabel "Aromatic hydrocarbon" ;
.
ppro:AromaticSide-Chain
a owl:Class ;
a sh:NodeShape ;
rdfs:label "Aromatic side-chain" ;
rdfs:subClassOf ppro:AminoAcid ;
skos:note "Amino acids with have an aromatic ring structure(s) as side chain" ;
skos:prefLabel "Aromatic side-chain" ;
.
ppro:CationicSide-Chain
a owl:Class ;
a sh:NodeShape ;
rdfs:label "Cationic side-chain" ;
rdfs:subClassOf ppro:AminoAcid ;
skos:note "Amino acids that have side chains are cations at neutral pH. Commonly referred to a s basic amino acids (although this term is not correct)" ;
skos:prefLabel "Cationic side-chain" ;
.
ppro:Cultivar
a owl:Class ;
rdfs:label "Cultivar" ;
......@@ -261,14 +227,6 @@ ppro:Phospholipid
skos:note " a bitter-tasting usually toxic plant-derived organic chemicals that have a foamy quality when agitated in water" ;
skos:prefLabel "Phospholipid" ;
.
ppro:PolarNeutralSide-Chain
a owl:Class ;
a sh:NodeShape ;
rdfs:label "Polar neutral side-chain" ;
rdfs:subClassOf ppro:AminoAcid ;
skos:note "Amino acids that have side chain contain alcohol (-OH)" ;
skos:prefLabel "Polar neutral side-chain" ;
.
ppro:ProcessedMaterial
a owl:Class ;
rdfs:comment "A processed material corresponds to a food substance containing protein that has undergone at least one process in any way. " ;
......@@ -335,14 +293,6 @@ ppro:SulfurCompound
skos:note "A compound containing sulfur" ;
skos:prefLabel "Sulfur compound" ;
.
ppro:SulfurContainingSide-Chain
a owl:Class ;
a sh:NodeShape ;
rdfs:label "Sulfur containing side-chain" ;
rdfs:subClassOf ppro:AminoAcid ;
skos:note "Amino acids that have side chains containing sulfur atoms" ;
skos:prefLabel "Sulfur containing side-chain" ;
.
ppro:Turbidity
a owl:Class ;
a sh:NodeShape ;
......@@ -375,10 +325,10 @@ ppro:acrid
skos:prefLabel "acrid" ;
.
ppro:alanine
a ppro:AliphaticSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:aliphaticSideChain ;
ppro:hasAbbreviation "Ala" ;
ppro:hasSingleLetterAbbreviation "A" ;
ppro:isEssentialAminoAcid false ;
rdfs:comment "https://en.wikipedia.org/wiki/Alanine" ;
rdfs:label "alanine" ;
skos:prefLabel "alanine" ;
......@@ -401,17 +351,35 @@ ppro:alcoholFractionationWet
rdfs:label "alcohol fractionation" ;
skos:prefLabel "alcohol fractionation" ;
.
ppro:aliphaticSideChain
a ppro:AminoAcidGroup ;
rdfs:label "aliphatic side chain" ;
skos:note "Amino acids of which the side chains (R group) only contain C and H. They do not ionize" ;
skos:prefLabel "aliphatic side chain" ;
.
ppro:almond
a ppro:SensoryCategory ;
rdfs:label "almond" ;
skos:prefLabel "almond" ;
.
ppro:amideSideChain
a ppro:AminoAcidGroup ;
rdfs:label "amide side chain" ;
skos:note "Amino acids that have amide side-chains." ;
skos:prefLabel "amide side chain" ;
.
ppro:ammoniumSulphatePrecipitation
a ppro:Method ;
rdfs:comment "fractionation" ;
rdfs:label "ammonium sulphate precipitation" ;
skos:prefLabel "ammonium sulphate precipitation" ;
.
ppro:anionicSideChain
a ppro:AminoAcidGroup ;
rdfs:label "anionic side chain" ;
skos:note "Amino acids that have side-chains that are anions at ordinary pH. These amino acids are often referred to as carboxyllic acids but a more correct term is carboxylate" ;
skos:prefLabel "anionic side chain" ;
.
ppro:aqueousFractionation
a ppro:Method ;
rdfs:comment "fractionation" ;
......@@ -419,27 +387,34 @@ ppro:aqueousFractionation
skos:prefLabel "aqueous fractionation" ;
.
ppro:arginine
a ppro:CationicSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:antioxidantAminoAcid ;
ppro:belongsToGroup ppro:cationicSideChain ;
ppro:hasAbbreviation "Arg" ;
ppro:hasSingleLetterAbbreviation "R" ;
ppro:isEssentialAminoAcid false ;
rdfs:comment "https://en.wikipedia.org/wiki/Arginine" ;
rdfs:label "arginine" ;
skos:prefLabel "arginine" ;
.
ppro:aromaticSideChain
a ppro:AminoAcidGroup ;
rdfs:label "aromatic side chain" ;
skos:note "Amino acids with have an aromatic ring structure(s) as side chain" ;
skos:prefLabel "aromatic side chain" ;
.
ppro:asparagine
a ppro:AmideSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:amideSideChain ;
ppro:hasAbbreviation "Asn" ;
ppro:hasSingleLetterAbbreviation "N" ;
ppro:isEssentialAminoAcid false ;
rdfs:comment "https://en.wikipedia.org/wiki/Asparagine" ;
rdfs:label "asparagine" ;
skos:prefLabel "asparagine" ;
.
ppro:aspartate
a ppro:AnionicSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:anionicSideChain ;
ppro:hasAbbreviation "Asp" ;
ppro:isEssentialAminoAcid false ;
rdfs:comment "https://en.wikipedia.org/wiki/Aspartic_acid" ;
rdfs:label "aspartate" ;
skos:altLabel "aspartic acid"@en ;
......@@ -455,6 +430,13 @@ ppro:beany
rdfs:label "beany" ;
skos:prefLabel "beany" ;
.
ppro:belongsToGroup
a owl:ObjectProperty ;
rdfs:domain ppro:AminoAcid ;
rdfs:label "belongs to group" ;
rdfs:range ppro:AminoAcidGroup ;
skos:prefLabel "belongs to group" ;
.
ppro:bitter
a ppro:SensoryCategory ;
rdfs:label "bitter" ;
......@@ -465,6 +447,13 @@ ppro:bland
rdfs:label "bland" ;
skos:prefLabel "bland" ;
.
ppro:branchedChainAminoAcid
a ppro:AminoAcidGroup ;
ppro:hasAbbreviation "BCAA" ;
rdfs:label "branched chain amino acid" ;
skos:altLabel "branched-chain amino acid" ;
skos:prefLabel "branched chain amino acid" ;
.
ppro:brothy
a ppro:SensoryCategory ;
rdfs:label "brothy" ;
......@@ -480,6 +469,12 @@ ppro:cardboard
rdfs:label "cardboard" ;
skos:prefLabel "cardboard" ;
.
ppro:cationicSideChain
a ppro:AminoAcidGroup ;
rdfs:label "cationic side chain" ;
skos:note "Amino acids that have side chains are cations at neutral pH. Commonly referred to a s basic amino acids (although this term is not correct)" ;
skos:prefLabel "cationic side chain" ;
.
ppro:chalky
a ppro:SensoryCategory ;
rdfs:label "chalky" ;
......@@ -512,10 +507,12 @@ ppro:containsStructure
skos:prefLabel "contains structure" ;
.
ppro:cysteine
a ppro:SulfurContainingSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:antioxidantAminoAcid ;
ppro:belongsToGroup ppro:essentialAminoAcid ;
ppro:belongsToGroup ppro:sulfurAminoAcid ;
ppro:hasAbbreviation "Cys" ;
ppro:hasSingleLetterAbbreviation "C" ;
ppro:isEssentialAminoAcid true ;
rdfs:comment "https://en.wikipedia.org/wiki/Cysteine" ;
rdfs:label "cysteine" ;
skos:prefLabel "cysteine" ;
......@@ -634,6 +631,12 @@ ppro:enzymeSubstrateRatio
rdfs:range xsd:string ;
skos:prefLabel "enzyme substrate ratio" ;
.
ppro:essentialAminoAcid
a ppro:AminoAcidGroup ;
ppro:hasAbbreviation "EAA" ;
rdfs:label "Essential amino acid" ;
skos:prefLabel "Essential amino acid" ;
.
ppro:fatty
a ppro:SensoryCategory ;
rdfs:label "fatty" ;
......@@ -667,29 +670,29 @@ ppro:freezeDrying
skos:prefLabel "freeze drying" ;
.
ppro:glutamate
a ppro:AnionicSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:anionicSideChain ;
ppro:hasAbbreviation "Glu" ;
ppro:hasSingleLetterAbbreviation "E" ;
ppro:isEssentialAminoAcid false ;
rdfs:comment "https://en.wikipedia.org/wiki/Glutamic_acid" ;
rdfs:label "glutamate" ;
skos:altLabel "glutamic acid" ;
skos:prefLabel "glutamate" ;
.
ppro:glutamine
a ppro:AmideSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:amideSideChain ;
ppro:hasAbbreviation "Gln" ;
ppro:hasSingleLetterAbbreviation "Q" ;
ppro:isEssentialAminoAcid false ;
rdfs:comment "https://en.wikipedia.org/wiki/Glutamine" ;
rdfs:label "glutamine" ;
skos:prefLabel "glutamine" ;
.
ppro:glycine
a ppro:AliphaticSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:aliphaticSideChain ;
ppro:hasAbbreviation "Gly" ;
ppro:hasSingleLetterAbbreviation "G" ;
ppro:isEssentialAminoAcid false ;
rdfs:comment "https://en.wikipedia.org/wiki/Glycine" ;
rdfs:label "glycine" ;
skos:prefLabel "glycine" ;
......@@ -712,6 +715,7 @@ ppro:grindingMilling
ppro:hasAbbreviation
a owl:DatatypeProperty ;
rdfs:domain ppro:AminoAcid ;
rdfs:domain ppro:AminoAcidGroup ;
rdfs:label "has abbreviation" ;
rdfs:range xsd:string ;
skos:prefLabel "has abbreviation" ;
......@@ -892,14 +896,22 @@ ppro:hexaneDefatting
skos:prefLabel "hexane defatting" ;
.
ppro:histidine
a ppro:CationicSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:antioxidantAminoAcid ;
ppro:belongsToGroup ppro:cationicSideChain ;
ppro:belongsToGroup ppro:essentialAminoAcid ;
ppro:hasAbbreviation "His" ;
ppro:hasSingleLetterAbbreviation "H" ;
ppro:isEssentialAminoAcid true ;
rdfs:comment "https://en.wikipedia.org/wiki/Histidine" ;
rdfs:label "histidine" ;
skos:prefLabel "histidine" ;
.
ppro:homocysteine
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:sulfurAminoAcid ;
rdfs:label "homocysteine" ;
skos:prefLabel "homocysteine" ;
.
ppro:hydrolysate
a ppro:MaterialType ;
rdfs:label "hydrolysate" ;
......@@ -915,13 +927,6 @@ ppro:hydrolysisEnzymatic
rdfs:label "enzymatic hydrolysis" ;
skos:prefLabel "enzymatic hydrolysis" ;
.
ppro:isEssentialAminoAcid
a owl:DatatypeProperty ;
rdfs:domain ppro:AminoAcid ;
rdfs:label "is essential amino acid" ;
rdfs:range xsd:boolean ;
skos:prefLabel "is essential amino acid" ;
.
ppro:isoElectricPointPrecipitation
a ppro:Method ;
rdfs:comment "fractionation" ;
......@@ -934,10 +939,12 @@ ppro:isolate
skos:prefLabel "isolate" ;
.
ppro:isoleucine
a ppro:AliphaticSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:aliphaticSideChain ;
ppro:belongsToGroup ppro:branchedChainAminoAcid ;
ppro:belongsToGroup ppro:essentialAminoAcid ;
ppro:hasAbbreviation "Ile" ;
ppro:hasSingleLetterAbbreviation "I" ;
ppro:isEssentialAminoAcid true ;
rdfs:comment "https://en.wikipedia.org/wiki/Isoleucine" ;
rdfs:label "isoleucine" ;
skos:prefLabel "isoleucine" ;
......@@ -954,10 +961,12 @@ ppro:leafy
skos:prefLabel "leafy" ;
.
ppro:leucine
a ppro:AliphaticSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:aliphaticSideChain ;
ppro:belongsToGroup ppro:branchedChainAminoAcid ;
ppro:belongsToGroup ppro:essentialAminoAcid ;
ppro:hasAbbreviation "Leu" ;
ppro:hasSingleLetterAbbreviation "L" ;
ppro:isEssentialAminoAcid true ;
rdfs:comment "https://en.wikipedia.org/wiki/Leucine" ;
rdfs:label "leucine" ;
skos:prefLabel "leucine" ;
......@@ -968,10 +977,12 @@ ppro:liquorice
skos:prefLabel "liquorice" ;
.
ppro:lysine
a ppro:CationicSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:antioxidantAminoAcid ;
ppro:belongsToGroup ppro:cationicSideChain ;
ppro:belongsToGroup ppro:essentialAminoAcid ;
ppro:hasAbbreviation "Lys" ;
ppro:hasSingleLetterAbbreviation "K" ;
ppro:isEssentialAminoAcid true ;
rdfs:comment "https://en.wikipedia.org/wiki/Lysine" ;
rdfs:label "lysine" ;
skos:prefLabel "lysine" ;
......@@ -998,10 +1009,13 @@ ppro:metallic
skos:prefLabel "metallic" ;
.
ppro:methionine
a ppro:SulfurContainingSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:antioxidantAminoAcid ;
ppro:belongsToGroup ppro:essentialAminoAcid ;
ppro:belongsToGroup ppro:sulfurAminoAcid ;
ppro:belongsToGroup ppro:sulfurContainingSideChain ;
ppro:hasAbbreviation "Met" ;
ppro:hasSingleLetterAbbreviation "M" ;
ppro:isEssentialAminoAcid true ;
rdfs:comment "https://en.wikipedia.org/wiki/Methionine" ;
rdfs:label "methionine" ;
skos:prefLabel "methionine" ;
......@@ -1050,24 +1064,31 @@ ppro:percent6
skos:prefLabel "percent" ;
.
ppro:phenylalanine
a ppro:AromaticSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:aromaticSideChain ;
ppro:belongsToGroup ppro:essentialAminoAcid ;
ppro:hasAbbreviation "Phe" ;
ppro:hasSingleLetterAbbreviation "F" ;
ppro:isEssentialAminoAcid true ;
rdfs:comment "https://en.wikipedia.org/wiki/Phenylalanine" ;
rdfs:label "phenylalanine" ;
skos:prefLabel "phenylalanine" ;
.
ppro:polarNeutralSideChain
a ppro:AminoAcidGroup ;
rdfs:label "polar neutral side chain" ;
skos:note "Amino acids that have side chain contain alcohol (-OH)" ;
skos:prefLabel "polar neutral side chain" ;
.
ppro:potato
a ppro:SensoryCategory ;
rdfs:label "potato" ;
skos:prefLabel "potato" ;
.
ppro:proline
a ppro:AliphaticSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:aliphaticSideChain ;
ppro:hasAbbreviation "Pro" ;
ppro:hasSingleLetterAbbreviation "P" ;
ppro:isEssentialAminoAcid false ;
rdfs:comment "https://en.wikipedia.org/wiki/Proline" ;
rdfs:label "proline" ;
skos:prefLabel "proline" ;
......@@ -1123,10 +1144,10 @@ ppro:scorched
skos:prefLabel "scorched" ;
.
ppro:serine
a ppro:PolarNeutralSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:polarNeutralSideChain ;
ppro:hasAbbreviation "Ser" ;
ppro:hasSingleLetterAbbreviation "S" ;
ppro:isEssentialAminoAcid false ;
rdfs:comment "https://en.wikipedia.org/wiki/Serine" ;
rdfs:label "serine" ;
skos:prefLabel "serine" ;
......@@ -1152,34 +1173,49 @@ ppro:sulfur
rdfs:label "sulfur" ;
skos:prefLabel "sulfur" ;
.
ppro:sulfurAminoAcid
a ppro:AminoAcidGroup ;
rdfs:label "sulfur amino acid" ;
skos:prefLabel "sulfur amino acid" ;
.
ppro:sulfurContainingSideChain
a ppro:AminoAcidGroup ;
rdfs:label "sulfur containing side chain" ;
skos:note "Amino acids that have side chains containing sulfur atoms" ;
skos:prefLabel "sulfur containing side chain" ;
.
ppro:sweet
a ppro:SensoryCategory ;
rdfs:label "sweet" ;
skos:prefLabel "sweet" ;
.
ppro:threonine
a ppro:PolarNeutralSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:essentialAminoAcid ;
ppro:belongsToGroup ppro:polarNeutralSideChain ;
ppro:hasAbbreviation "Thr" ;
ppro:hasSingleLetterAbbreviation "T" ;
ppro:isEssentialAminoAcid true ;
rdfs:comment "https://en.wikipedia.org/wiki/Threonine" ;
rdfs:label "threonine" ;
skos:prefLabel "threonine" ;
.
ppro:tryptophan
a ppro:AromaticSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:aromaticSideChain ;
ppro:belongsToGroup ppro:essentialAminoAcid ;
ppro:hasAbbreviation "Trp" ;
ppro:hasSingleLetterAbbreviation "W" ;
ppro:isEssentialAminoAcid true ;
rdfs:comment "https://en.wikipedia.org/wiki/Tryptophan" ;
rdfs:label "tryptophan" ;
skos:prefLabel "tryptophan" ;
.
ppro:tyrosine
a ppro:AromaticSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:antioxidantAminoAcid ;
ppro:belongsToGroup ppro:aromaticSideChain ;
ppro:belongsToGroup ppro:essentialAminoAcid ;
ppro:hasAbbreviation "Tyr" ;
ppro:hasSingleLetterAbbreviation "Y" ;
ppro:isEssentialAminoAcid true ;
rdfs:comment "https://en.wikipedia.org/wiki/Tyrosine" ;
rdfs:label "tyrosine" ;
skos:altLabel "4-hydroxyphenylalanine" ;
......@@ -1192,10 +1228,12 @@ ppro:umami
skos:prefLabel "umami" ;
.
ppro:valine
a ppro:AliphaticSide-Chain ;
a ppro:AminoAcid ;
ppro:belongsToGroup ppro:aliphaticSideChain ;
ppro:belongsToGroup ppro:branchedChainAminoAcid ;
ppro:belongsToGroup ppro:essentialAminoAcid ;
ppro:hasAbbreviation "Val" ;
ppro:hasSingleLetterAbbreviation "V" ;
ppro:isEssentialAminoAcid true ;
rdfs:comment "https://en.wikipedia.org/wiki/Valine" ;
rdfs:label "valine" ;
skos:prefLabel "valine" ;
......
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