Update 06_R_abund_prev_analysis.R, 05_kraken_output.sh

05_kraken_output.sh

@@ -41,6 +41,6 @@ kraken-biom ${INDIR}/05_kraken_anno/*.kreport --fmt json -o ${INDIR}/05_kraken_a
 echo "merge logfile previous steps"
 printf "%-20s | %-20s | %-20s | %-20s | %-20s | %-20s | %-20s | %-20s\n" "sample_ID" "raw_reads" "trimmed_reads" "filtered_reads" "krak_readpairs" "krak_unreadpairs" "nr_contigs" "nr_filt_contigs"> $INDIR/reads_per_sample.txt 
 cat ${INDIR}/09_temp_log_parts/reads_per_sample_* >> $INDIR/reads_per_sample.txt
-  #=============================================================================================
-  # script end
-  # Paul Stege; paul.stege@wur.nl
+#=============================================================================================
+# script end
+# Paul Stege; paul.stege@wur.nl

06_R_abund_prev_analysis.R

@@ -225,4 +225,7 @@ start_time <- Sys.time()
 	end_time <- Sys.time()
   print(" Duration of R processing:")
 	end_time - start_time
-	# 
\ No newline at end of file
+	# 
+#=============================================================================================
+# script end
+# Paul Stege; paul.stege@wur.nl
\ No newline at end of file